BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930677
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25460.1 | Symbols: | F-box and associated interaction doma... 1027 0.0
AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 335 7e-91
AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 329 3e-89
AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 267 2e-70
AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 267 2e-70
AT1G25141.1 | Symbols: | F-box associated ubiquitination effec... 263 3e-69
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 134 3e-30
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 117 3e-25
> AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9231581-9232666 REVERSE LENGTH=1086
Length=1086
Score = 1027 bits (556), Expect = 0.0
Identities = 936/1113 (84%), Gaps = 51/1113 (5%)
Strand=Plus/Plus
Query 23 ATGATGATGCCAGAACTTCCAAAGGATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCA 82
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGATGATGCCAGAACTTCCAGAGGATTTGTTAGTGGAGATACTCTGCCGCGTTCCGGCT 60
Query 83 ACATCTCTGAAACGATTACGATCTACTTGCAAACGATGGAACCTTTTAAAAAACGATAAG 142
|||||| ||||||||||||||||||||||||||| |||||||| |||| | |||||||||
Sbjct 61 ACATCTTTGAAACGATTACGATCTACTTGCAAACTATGGAACCATTTATACAACGATAAG 120
Query 143 AGATTCACAAGAAAACACTTCCACAAAGCCCCAAGACAATCTCTGATTCTCATGTGGAAT 202
||||||| ||| ||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 121 AGATTCAAAAGCAAACACTGCCATAAAGCCCCAAGGCAATCTCTGATTCTCATGTGGAA- 179
Query 203 G-AGTTTGGGTTTTCTTCGATGAACATCAATCTACACAGAGTTTCACCTATAGAGGTCAC 261
| | ||||| ||||||||||| | ||||||||| || |||||||||||||||||||||||
Sbjct 180 GAATTTTGGTTTTTCTTCGATTAGCATCAATCTCCAAAGAGTTTCACCTATAGAGGTCAC 239
Query 262 TGGTGAACTTAACCTAATCGACCCTCATTATAGTTTAGATCA-GTTCAGGAACTCTCTAC 320
||||||||||||||||||||||| ||||| |||||||| | | |||||||||||||| |
Sbjct 240 TGGTGAACTTAACCTAATCGACCATCATTCTAGTTTAGGT-ATGTTCAGGAACTCTCCAT 298
Query 321 TCTGCCACACTTCTGGCTTATTGTTATT-GTTATGCGTCTGTGACAACAACGAAGTGGAA 379
| || || ||||||||||||||||||| || | ||| | || || || | ||
Sbjct 299 TATGTCAAACTTCTGGCTTATTGTTATGCGTCAA-CGT--G-GAGAA-AAT----T--AA 347
Query 380 GGTACTAGGCTCGTGGTATGGAACCCGTGTACCGGTCTAACCAAGTGGATCCAACACAGA 439
|||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct 348 --TACTAGGCTCGTGGTATGGAACCCGTGTACTGGTAAAACCAAGTGGATTCAACACAGA 405
Query 440 AAGCTTTGCTACATCTGTACCTATGCTCTTGGTTCTTACCAAGACAACAAATCTGGCAAT 499
| | | |||||||||| | |||||||||||| || ||||||||||| ||||| | ||||
Sbjct 406 AGGATGGGCTACATCTGCAACTATGCTCTTGGATCCTACCAAGACAAAAAATCCGACAAT 465
Query 500 AAGAGCTACAAAATATTGAGCCGCAGGTTTTATGGTCACCAAGACCCAGAATTCGAAATT 559
|| ||||||||||||||||||| | || |||||||| |||||| | |||||||||
Sbjct 466 AATAGCTACAAAATATTGAGCCACGGGATTTATGGTGGCCAAGA----G--TTCGAAATT 519
Query 560 TATGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCAATGTGGACTGCACCGAT 619
|||||||||||||| ||||||||||||| || ||||||||| |||||||| | | |
Sbjct 520 TATGAGATTAACTCAAATTCATGGAGGAT--TC-TTGATGTCACTGTGGACTCCTCT--T 574
Query 620 ATGTACATTCGGAA-CGTGTCTTTGAAAGGAAAGACTTACTGGTTTGCTACAAATGAAAA 678
|||||||| | || ||| |||||||| || ||||||||||||||||||||| ||| |||
Sbjct 575 -TGTACATT-GAAAACGTTTCTTTGAAGGGTAAGACTTACTGGTTTGCTACAGATGGAAA 632
Query 679 AGAGAAACAACT-CGGCCTATTCTTAATCAGTTTTGATTATACAACAGAAAGATTTGAAC 737
|| |||| | || ||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 633 TGATAAACCG-TGCGACCTATTCTTGATCTGTTTTGATTATACGACAGAAAGATTTGAAC 691
Query 738 GTCTATGTCTACCTTATCCGCAT-CCATATCATGGTTATCAAAACGAGTCTCTATCTGTT 796
|||||||||| || |||| | || || ||| | || || | | | |||||||| |||
Sbjct 692 GTCTATGTCTTCCGTATCAG-ATTCCGTATTTTCGTAAT-A---C-A-TCTCTATCAGTT 744
Query 797 GTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTACATTTACGTCGAAGACAGAGATA 856
|||| ||||||||||||||| ||||||||||||| | | |||| ||||||||| |||||
Sbjct 745 GTTAAAGAAGAGAAACTTTCCGTGTTATTACAACCTTCCCTTACATCGAAGACACAGATA 804
Query 857 TGGGTGACAAATAAGATTGGTGAGACCAAAGTGTTGTCGTGGATCAAGGTCTTAGCGGTG 916
|||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||
Sbjct 805 TGGGTGACAAATAAGATTGGTGAGGCCAAAGTGTTGTCGTGGATCAAGTTTTTAACGGTG 864
Query 917 GATTTGACGCCTGAGCCCAAATTTGACATAAAATTCTTGGTCGATGAGGAGAAGAAAGTC 976
||||||| ||||||| |||| || ||||||||||||||||||||||||||| ||||||
Sbjct 865 GATTTGAAGCCTGAGATTAAATATGGCATAAAATTCTTGGTCGATGAGGAGAACAAAGTC 924
Query 977 CTCGTGTAT-ACTCAAAATAATGGATACAAAAGCCAAAGT-AT--TG-TATACATCGTTG 1031
|| |||||| | |||||| || | | ||| | |||| | || ||||| ||||||
Sbjct 925 CTTGTGTATGAG-CAAAATTTTGTA-ATAAACGGCAAAAACAACATGATATACGTCGTTG 982
Query 1032 GAAAGGACAACAAAGTTAGGGAAGTGGAT-TTTGGAGACGAATTCAAACCATTTTTGTTG 1090
|| |||||||| ||||||||||||||| | ||| ||| || ||| |||||||| || ||
Sbjct 983 GAGAGGACAACGAAGTTAGGGAAGTGG-TGTTTAGAGTCGGATTAAAACCATTATTCTTT 1041
Query 1091 AATTACGTTCCAAGCTTGACTCAAATCCAGCAA 1123
|||| |||||||| ||||||||||||| ||||
Sbjct 1042 TATTATGTTCCAAGTTTGACTCAAATCCGGCAA 1074
> AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8831724-8832760 FORWARD LENGTH=1037
Length=1037
Score = 335 bits (181), Expect = 7e-91
Identities = 695/929 (75%), Gaps = 92/929 (10%)
Strand=Plus/Plus
Query 26 ATGATGCCAGAACTTCCAAAGGATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCAACA 85
|||||| | ||||||||| || |||||||||| |||||||||| ||||||||| || |
Sbjct 1 ATGATGTCGGAACTTCCAGAGCATTTGTTAGAAGAGATACTCTACCGCGTTCCAGCTATG 60
Query 86 TCTCTGAAACGA-TTACGATCTACTTGCAAACGATGGAACCT-TTTAAAAAACGATAAGA 143
||| |||||| | ||| | |||||||||||| ||||||| || |||| || |||| ||
Sbjct 61 TCTTTGAAAC-AGTTAGGGTCTACTTGCAAAGGATGGAA-CTGTTTATTCAAGGATAGGA 118
Query 144 GATTCACAAGAAAACACTTCCACAAA-GCCCCAAGACAATCTCTGATTCTCATGTGGAAT 202
||||||||||||||||||| | ||| |||| ||| || | |||||||| ||||| ||
Sbjct 119 GATTCACAAGAAAACACTTGGATAAAGGCCCAAAG-CAGTTTCTGATTCACATGTCTAAA 177
Query 203 GAG-TTTGGGTTTTCTTCGATGAACATCAATCTACACAGAGTTTCACCTATAGAGGTCAC 261
| | || |||| | ||||||| || |||| || ||| || ||| | || |||||||
Sbjct 178 GGGCTTAGGGTACGC-TCGATGAGTGTCGATCTCCATAGACTTCCACATGTAAAGGTCAC 236
Query 262 TGGTGAACTTAACCTAATCGACCCT-CAT-T-ATAGTTTAGATC-AGTTCAGGA--ACTC 315
| |||| ||| ||||||| ||||| || | ||| || | || || ||| || | |
Sbjct 237 AGTTGAATTTACCCTAATCAACCCTAAATATCCTAG-TT-G-TCTAGATCAAGATCAAT- 292
Query 316 TCTA-CTCTGCCACACT-TCTGGCT--TATTG-TTATTGTTATGCGTCTGTGACAACAAC 370
|| | | | | | | ||| || | | ||||||||||||||||| | || |||
Sbjct 293 TCGAGATAT-ATAAAGTCTCTCACTGCGACGGCTTATTGTTATGCGTCTGCGTCACCAA- 350
Query 371 GAAGTGGA-AGGTACTAGGCTCGTGGTATGGAACCCGTGTACCGGTCTAACCAA-GTGGA 428
| | ||| | |||| |||||| |||||||||||||||||| |||| || ||| |||||
Sbjct 351 G--GAGGACA-ATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTC-AAACAAGGTGGA 406
Query 429 TCCAACACAGAAAGCTTTGCTACATCTGTAC--CTATGCTCTTGGTTCTTACCAAGACAA 486
| |||| || | | | | || || || |||| |||| || || || | | |
Sbjct 407 TTCAACCCA-TGA-C--T--T--ATATG-ACAACTATACTCTCGGATCCTA-C----C-A 451
Query 487 CAAATCTGGCAATAAGAGCTACAAAATATTGAGC-CGCA--GGTTTTATGGTCACCAAGA 543
||| | ||| |||||||| |||||| || | || || ||| ||| | | ||
Sbjct 452 -AAA--T---AAT---AGCTACAATATATTG-GCACACACTGG-TTT-TGG---CTACGA 496
Query 544 CCCA-GAATTCGAAATTTATGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCA 602
||| |||||| |||||||||| |||||||| ||||||| ||||||| |||||| ||
Sbjct 497 -CCACGAATTCCAAATTTATGAAATTAACTCCAATTCAT---GGAGGATTATTGATGCCA 552
Query 603 ATGTGGACTGCACCGA-TA-TGTACA-T--TCG-GAACGTGTCTTTGAAAGGAAAGACTT 656
| |||||| || | || ||| | | ||| | |||||||||||| ||||||||||
Sbjct 553 CTTTGGACTTCA--AATTAGGGTATATTGGTCGTG-GCGTGTCTTTGAAGGGAAAGACTT 609
Query 657 ACTGGTTTGCTACAAATGAAAAAGAGAAACAACTCGGCCTATTCTTAATCAGTTTTGATT 716
||||| |||||| |||| ||||||||| || ||| ||||||||||||||||||||
Sbjct 610 ACTGGATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATT 669
Query 717 ATACAACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCA-TATCATGGTTAT 775
|||| ||||||||||||||||||||||| | | | |||| || | |||| | |||||
Sbjct 670 ATACGACAGAAAGATTTGAACGTCTATG--T--C-T-TCCGAAT-AAGTATCCTTGTTAT 722
Query 776 -CAAAACGAGTCTCTATCTGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTAC 834
||| | | ||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct 723 GCAACTC-TGGCTCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGG 781
Query 835 ATTTACGTCGAAGACAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGT 893
| ||| || ||| |||| ||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 782 AATTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGT 840
Query 894 CGTGGATCAAGGTCTTAGCGGTGGATTTG 922
|||||| || ||||||||| ||||||||
Sbjct 841 CGTGGAGCATGGTCTTAGCTTTGGATTTG 869
> AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8766060-8767096 FORWARD LENGTH=1037
Length=1037
Score = 329 bits (178), Expect = 3e-89
Identities = 694/929 (75%), Gaps = 92/929 (10%)
Strand=Plus/Plus
Query 26 ATGATGCCAGAACTTCCAAAGGATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCAACA 85
|||||| | ||||||||| || |||||||||| |||||||||| ||||||||| || |
Sbjct 1 ATGATGTCGGAACTTCCAGAGCATTTGTTAGAAGAGATACTCTACCGCGTTCCAGCTATG 60
Query 86 TCTCTGAAACGA-TTACGATCTACTTGCAAACGATGGAACCT-TTTAAAAAACGATAAGA 143
||| |||||| | ||| | |||||||||||| ||||||| || |||| || |||| ||
Sbjct 61 TCTTTGAAAC-AGTTAGGGTCTACTTGCAAAGGATGGAA-CTGTTTATTCAAGGATAGGA 118
Query 144 GATTCACAAGAAAACACTTCCACAAA-GCCCCAAGACAATCTCTGATTCTCATGTGGAAT 202
||||||||||||||||||| | ||| |||| ||| || | |||||||| ||||| ||
Sbjct 119 GATTCACAAGAAAACACTTGGATAAAGGCCCAAAG-CAGTTTCTGATTCACATGTCTAAA 177
Query 203 GAG-TTTGGGTTTTCTTCGATGAACATCAATCTACACAGAGTTTCACCTATAGAGGTCAC 261
| | || |||| | ||||||| || |||| || ||| || ||| | || | |||||
Sbjct 178 GGGCTTAGGGTACGC-TCGATGAGTGTCGATCTCCATAGACTTCCACATGTAAAAGTCAC 236
Query 262 TGGTGAACTTAACCTAATCGACCCT-CAT-T-ATAGTTTAGATC-AGTTCAGGA--ACTC 315
| |||| ||| ||||||| ||||| || | ||| || | || || ||| || | |
Sbjct 237 AGTTGAATTTACCCTAATCAACCCTAAATATCCTAG-TT-G-TCTAGATCAAGATCAAT- 292
Query 316 TCTA-CTCTGCCACACT-TCTGGCT--TATTG-TTATTGTTATGCGTCTGTGACAACAAC 370
|| | | | | | | ||| || | | ||||||||||||||||| | || |||
Sbjct 293 TCGAGATAT-ATAAAGTCTCTCACTGCGACGGCTTATTGTTATGCGTCTGCGTCACCAA- 350
Query 371 GAAGTGGA-AGGTACTAGGCTCGTGGTATGGAACCCGTGTACCGGTCTAACCAA-GTGGA 428
| | ||| | |||| |||||| |||||||||||||||||| |||| || ||| |||||
Sbjct 351 G--GAGGACA-ATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTC-AAACAAGGTGGA 406
Query 429 TCCAACACAGAAAGCTTTGCTACATCTGTAC--CTATGCTCTTGGTTCTTACCAAGACAA 486
| |||| || | | | | || || || |||| |||| || || || | | |
Sbjct 407 TTCAACCCA-TGA-C--T--T--ATATG-ACAACTATACTCTCGGATCCTA-C----C-A 451
Query 487 CAAATCTGGCAATAAGAGCTACAAAATATTGAGC-CGCA--GGTTTTATGGTCACCAAGA 543
||| | ||| |||||||| |||||| || | || || ||| ||| | | ||
Sbjct 452 -AAA--T---AAT---AGCTACAATATATTG-GCACACACTGG-TTT-TGG---CTACGA 496
Query 544 CCCA-GAATTCGAAATTTATGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCA 602
||| |||||| |||||||||| |||||||| ||||||| ||||||| |||||| ||
Sbjct 497 -CCACGAATTCCAAATTTATGAAATTAACTCCAATTCAT---GGAGGATTATTGATGCCA 552
Query 603 ATGTGGACTGCACCGA-TA-TGTACA-T--TCG-GAACGTGTCTTTGAAAGGAAAGACTT 656
| |||||| || | || ||| | | ||| | |||||||||||| ||||||||||
Sbjct 553 CTTTGGACTTCA--AATTAGGGTATATTGGTCGTG-GCGTGTCTTTGAAGGGAAAGACTT 609
Query 657 ACTGGTTTGCTACAAATGAAAAAGAGAAACAACTCGGCCTATTCTTAATCAGTTTTGATT 716
||||| |||||| |||| ||||||||| || ||| ||||||||||||||||||||
Sbjct 610 ACTGGATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATT 669
Query 717 ATACAACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCA-TATCATGGTTAT 775
|||| ||||||||||||||||||||||| | | | |||| || | |||| | |||||
Sbjct 670 ATACGACAGAAAGATTTGAACGTCTATG--T--C-T-TCCGAAT-AAGTATCCTTGTTAT 722
Query 776 -CAAAACGAGTCTCTATCTGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTAC 834
||| | | ||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct 723 GCAACTC-TGGCTCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGG 781
Query 835 ATTTACGTCGAAGACAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGT 893
| ||| || ||| |||| ||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 782 AATTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGT 840
Query 894 CGTGGATCAAGGTCTTAGCGGTGGATTTG 922
|||||| || ||||||||| ||||||||
Sbjct 841 CGTGGAGCATGGTCTTAGCTTTGGATTTG 869
> AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8803300-8804091 FORWARD LENGTH=792
Length=792
Score = 267 bits (144), Expect = 2e-70
Identities = 489/648 (75%), Gaps = 54/648 (8%)
Strand=Plus/Plus
Query 497 AATAAGAGCTACAAAATATTGAGC-CGCA--GGTTTTATGGTCACCAAGACCCA-GAATT 552
||||| |||||||| |||||| || | || || ||| ||| | | || ||| |||||
Sbjct 121 AATAATAGCTACAATATATTG-GCACACACTGG-TTT-TGG---CTACGA-CCACGAATT 173
Query 553 CGAAATTTATGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCAATGTGGACTG 612
| |||||||||| |||||||| ||||||| ||||||| |||||| || | ||||||
Sbjct 174 CCAAATTTATGAAATTAACTCCAATTCAT---GGAGGATTATTGATGCCACTTTGGACTT 230
Query 613 CACCGA-TA-TGTACA-T--TCG-GAACGTGTCTTTGAAAGGAAAGACTTACTGGTTTGC 666
|| | || ||| | | ||| | |||||||||||| ||||||||||||||| ||||
Sbjct 231 CA--AATTAGGGTATATTGGTCGTG-GCGTGTCTTTGAAGGGAAAGACTTACTGGATTGC 287
Query 667 TACAAATGAAAAAGAGAAACAACTCGGCCTATTCTTAATCAGTTTTGATTATACAACAGA 726
|| |||| ||||||||| || ||| |||||||||||||||||||||||| |||||
Sbjct 288 TAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATACGACAGA 347
Query 727 AAGATTTGAACGTCTATGTCTACCTTATCCGCATCCA-TATCATGGTTAT-CAAAACGAG 784
|||||||||||||||||| | | | |||| || | |||| | ||||| ||| | |
Sbjct 348 AAGATTTGAACGTCTATG--T--C-T-TCCGAAT-AAGTATCCTTGTTATGCAACTC-TG 399
Query 785 TCTCTATCTGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTACATTTACGTCG 844
||||||| ||||||||||||||||||||||| |||||| ||||| | ||| ||
Sbjct 400 GCTCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAATTAAATCA 459
Query 845 AAGACAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCGTGGATCAA 903
||| |||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct 460 AAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCAT 518
Query 904 GGTCTTAGCGGTGGATTTG-ACGCCTGAGCCCAA-ATTTGACATAA----AA-TT-CTTG 955
||||||||| |||||||| | |||| | | ||| | | || || || ||||
Sbjct 519 GGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTATTGGGGA-AAGCGGAAGTTTCTTG 576
Query 956 GTCGATGAGGAGAAGAAAGTCCTCGTGTATACTCAAAATAATGGATACAAAAGCCAAAGT 1015
||||| ||| |||||| ||| |||||| | | | |||| | || || || | |||
Sbjct 577 GTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAAGGAAAAACC 636
Query 1016 ATTGTATACATCGTTGGAAAGGACAACAAAGTTAGGGAAGTGGATTTTGGAGACGAATTC 1075
| ||| |||| ||||| ||||||||||||| | |||||| ||||| || || || |
Sbjct 637 ACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGAT-C 695
Query 1076 AAAC-CAT-T--T-T-TGTTGAATTACGTTCCAAGCTTGACTCAAATC 1117
| | | | | | | |||| |||| |||||||| ||||||||||||
Sbjct 696 AT-CTC-TGTAATGTATGTTTTATTATGTTCCAAGTTTGACTCAAATC 741
> AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8780844-8781536 FORWARD LENGTH=693
Length=693
Score = 267 bits (144), Expect = 2e-70
Identities = 489/648 (75%), Gaps = 54/648 (8%)
Strand=Plus/Plus
Query 497 AATAAGAGCTACAAAATATTGAGC-CGCA--GGTTTTATGGTCACCAAGACCCA-GAATT 552
||||| |||||||| |||||| || | || || ||| ||| | | || ||| |||||
Sbjct 49 AATAATAGCTACAATATATTG-GCACACACTGG-TTT-TGG---CTACGA-CCACGAATT 101
Query 553 CGAAATTTATGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCAATGTGGACTG 612
| |||||||||| |||||||| ||||||| ||||||| |||||| || | ||||||
Sbjct 102 CCAAATTTATGAAATTAACTCCAATTCAT---GGAGGATTATTGATGCCACTTTGGACTT 158
Query 613 CACCGA-TA-TGTACA-T--TCG-GAACGTGTCTTTGAAAGGAAAGACTTACTGGTTTGC 666
|| | || ||| | | ||| | |||||||||||| ||||||||||||||| ||||
Sbjct 159 CA--AATTAGGGTATATTGGTCGTG-GCGTGTCTTTGAAGGGAAAGACTTACTGGATTGC 215
Query 667 TACAAATGAAAAAGAGAAACAACTCGGCCTATTCTTAATCAGTTTTGATTATACAACAGA 726
|| |||| ||||||||| || ||| |||||||||||||||||||||||| |||||
Sbjct 216 TAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATACGACAGA 275
Query 727 AAGATTTGAACGTCTATGTCTACCTTATCCGCATCCA-TATCATGGTTAT-CAAAACGAG 784
|||||||||||||||||| | | | |||| || | |||| | ||||| ||| | |
Sbjct 276 AAGATTTGAACGTCTATG--T--C-T-TCCGAAT-AAGTATCCTTGTTATGCAACTC-TG 327
Query 785 TCTCTATCTGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTACATTTACGTCG 844
||||||| ||||||||||||||||||||||| |||||| ||||| | ||| ||
Sbjct 328 GCTCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAATTAAATCA 387
Query 845 AAGACAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCGTGGATCAA 903
||| |||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct 388 AAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCAT 446
Query 904 GGTCTTAGCGGTGGATTTG-ACGCCTGAGCCCAA-ATTTGACATAA----AA-TT-CTTG 955
||||||||| |||||||| | |||| | | ||| | | || || || ||||
Sbjct 447 GGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTATTGGGGA-AAGCGGAAGTTTCTTG 504
Query 956 GTCGATGAGGAGAAGAAAGTCCTCGTGTATACTCAAAATAATGGATACAAAAGCCAAAGT 1015
||||| ||| |||||| ||| |||||| | | | |||| | || || || | |||
Sbjct 505 GTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAAGGAAAAACC 564
Query 1016 ATTGTATACATCGTTGGAAAGGACAACAAAGTTAGGGAAGTGGATTTTGGAGACGAATTC 1075
| ||| |||| ||||| ||||||||||||| | |||||| ||||| || || || |
Sbjct 565 ACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGAT-C 623
Query 1076 AAAC-CAT-T--T-T-TGTTGAATTACGTTCCAAGCTTGACTCAAATC 1117
| | | | | | | |||| |||| |||||||| ||||||||||||
Sbjct 624 AT-CTC-TGTAATGTATGTTTTATTATGTTCCAAGTTTGACTCAAATC 669
> AT1G25141.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:8817678-8818382 FORWARD LENGTH=705
Length=705
Score = 263 bits (142), Expect = 3e-69
Identities = 346/439 (79%), Gaps = 35/439 (8%)
Strand=Plus/Plus
Query 497 AATAAGAGCTACAAAATATTGAGC-CGCA--GGTTTTATGGTCACCAAGACCCA-GAATT 552
||||| |||||||| |||||| || | || || ||| ||| | | || ||| |||||
Sbjct 121 AATAATAGCTACAATATATTG-GCACACACTGG-TTT-TGG---CTACGA-CCACGAATT 173
Query 553 CGAAATTTATGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCAATGTGGACTG 612
| |||||||||| |||||||| ||||||| ||||||| |||||| || | ||||||
Sbjct 174 CCAAATTTATGAAATTAACTCCAATTCAT---GGAGGATTATTGATGCCACTTTGGACTT 230
Query 613 CACCGA-TA-TGTACA-T--TCG-GAACGTGTCTTTGAAAGGAAAGACTTACTGGTTTGC 666
|| | || ||| | | ||| | |||||||||||| ||||||||||||||| ||||
Sbjct 231 CA--AATTAGGGTATATTGGTCGTG-GCGTGTCTTTGAAGGGAAAGACTTACTGGATTGC 287
Query 667 TACAAATGAAAAAGAGAAACAACTCGGCCTATTCTTAATCAGTTTTGATTATACAACAGA 726
|| |||| ||||||||| || ||| |||||||||||||||||||||||| |||||
Sbjct 288 TAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATACGACAGA 347
Query 727 AAGATTTGAACGTCTATGTCTACCTTATCCGCATCCA-TATCATGGTTAT-CAAAACGAG 784
|||||||||||||||||| | | | |||| || | |||| | ||||| ||| | |
Sbjct 348 AAGATTTGAACGTCTATG--T--C-T-TCCGAAT-AAGTATCCTTGTTATGCAACTC-TG 399
Query 785 TCTCTATCTGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTACATTTACGTCG 844
||||||| ||||||||||||||||||||||| |||||| ||||| | ||| ||
Sbjct 400 GCTCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAATTAAATCA 459
Query 845 AAGACAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCGTGGATCAA 903
||| |||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct 460 AAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCAT 518
Query 904 GGTCTTAGCGGTGGATTTG 922
||||||||| ||||||||
Sbjct 519 GGTCTTAGCTTTGGATTTG 537
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 134 bits (72), Expect = 3e-30
Identities = 117/138 (85%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 794 GTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAACGTACATTTACGT-CGAAGACAGA 852
||||||||||||||||||||||||||||||||||| || | || || || | ||||| ||
Sbjct 1981 GTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAGCG-AGATATAAGTTCCAAGACTGA 2039
Query 853 GATATGGGTGACAAATAAGATTGGTGAGACCA--AA-GTGTTGTCGTGGATCAAGGTCTT 909
|||||||||||||| |||||||| ||| |||| || ||| |||| |||| |||| ||||
Sbjct 2040 GATATGGGTGACAAGTAAGATTGATGACACCACCAAAGTGGTGTCTTGGAGCAAGATCTT 2099
Query 910 AGCGGTGGATTTGACGCC 927
||| ||||||||| |||
Sbjct 2100 AGCATTGGATTTGA-GCC 2116
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 117 bits (63), Expect = 3e-25
Identities = 155/197 (79%), Gaps = 16/197 (8%)
Strand=Plus/Plus
Query 46 GGATTTGTTAGAGGAGATACTCTGC-CGCGTTCCGGCAACATCTCTGAAACGATTACGAT 104
||||||| |||| || ||||||| | | ||| |||| ||||||||||||||||||||||
Sbjct 18 GGATTTGGTAGAAGAAATACTCT-CAAGGGTTTCGGCCACATCTCTGAAACGATTACGAT 76
Query 105 CTACTTGCAAACGATGGAAC-CTTT-T--AAAAAACGATAAGAGATTCA-CAAGAAAACA 159
|||||||||||| ||||||| |||| | ||||||||| | | |||| | ||||| ||
Sbjct 77 CTACTTGCAAACAATGGAACACTTTATTCAAAAAACGA-A-GT--TTCAGCCAGAAA-CA 131
Query 160 CTTCCACAAAGCCCCAAGACAA-TCTCTGATTCTCATGTGGAATGAGTTTGG-GTTTTCT 217
||| || | ||| |||| | | ||| || ||||||||| ||| |||| | |||| ||
Sbjct 132 CTTTCATATAGCTCCAA-AGGAGTCTATGGTTCTCATGTTGAAGGAGTACAGAGTTTGCT 190
Query 218 TCGATGAACATCAATCT 234
| ||||| ||||||||
Sbjct 191 -CAATGAATATCAATCT 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5