BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930679 Length=1135 Score E Sequences producing significant alignments: (Bits) Value AT3G25460.1 | Symbols: | F-box and associated interaction doma... 1109 0.0 AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 483 2e-135 AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 477 1e-133 AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 340 1e-92 AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 340 1e-92 AT1G25141.1 | Symbols: | F-box associated ubiquitination effec... 322 5e-87 AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 134 2e-30 > AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:9231581-9232666 REVERSE LENGTH=1086 Length=1086 Score = 1109 bits (600), Expect = 0.0 Identities = 949/1112 (85%), Gaps = 46/1112 (4%) Strand=Plus/Plus Query 23 ATGATGATGCCGGAACTTCCAGAAGATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCT 82 ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1 ATGATGATGCCAGAACTTCCAGAGGATTTGTTAGTGGAGATACTCTGCCGCGTTCCGGCT 60 Query 83 ACATCTTTGAAACAG-TTACGATGTACTTGCAAACTATGGAACCGTTTATTCAACGATAA 141 ||||||||||||| | ||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 61 ACATCTTTGAAAC-GATTACGATCTACTTGCAAACTATGGAACCATTTATACAACGATAA 119 Query 142 GAGATTCGCAAGAAAACACTTCCGTAAAGCCCCAAGGCAATCTCTGATTCTCATGTTGAA 201 ||||||| ||| ||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 120 GAGATTCAAAAGCAAACACTGCCATAAAGCCCCAAGGCAATCTCTGATTCTCATGTGGAA 179 Query 202 GAATTTAGGGTTTTCTTCGATGAGCTTCAATCTCCACCGAGTTTCACCAATAGAGATCAT 261 |||||| || ||||||||||| ||| |||||||||| |||||||||| |||||| ||| Sbjct 180 GAATTTTGGTTTTTCTTCGATTAGCATCAATCTCCAAAGAGTTTCACCTATAGAGGTCAC 239 Query 262 TGGTGAACTTAACCTAATCGACCCTCATTCTAGTTCATATCTATTCAAGATCTATCAAAG 321 ||||||||||||||||||||||| ||||||||||| | | | |||| || || || | Sbjct 240 TGGTGAACTTAACCTAATCGACCATCATTCTAGTTTAGGTATGTTCAGGAACTCTCCATT 299 Query 322 CTATCACAGTTCAGACGGTTTATTGTTATGCGTCAACAACATGGAG-GGA--AGTACTAG 378 | ||| | ||| || |||||||||||||| |||| ||||| | | |||||| Sbjct 300 ATGTCAAACTTC---TGGCTTATTGTTATGCGT---CAACGTGGAGAAAATTAATACTAG 353 Query 379 GCTCGTGGTATGGAACCCGTGTACTGGTCAAACCAAGTGGATCCAACACAGAAAGATAGG 438 |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| || Sbjct 354 GCTCGTGGTATGGAACCCGTGTACTGGTAAAACCAAGTGGATTCAACACAGAAGGATGGG 413 Query 439 CTACTTCTGCACCTATTCTCTTGGATCCTACCAAGACAACAAATCCGGA-AATAATAGCT 497 |||| |||||| |||| |||||||||||||||||||||| |||||| || |||||||||| Sbjct 414 CTACATCTGCAACTATGCTCTTGGATCCTACCAAGACAAAAAATCC-GACAATAATAGCT 472 Query 498 ACAAAATATTGAGCCGTAGGATTAATGGTTACCCAGAATTCGAAATTTATGAGATTAACT 557 ||||||||||||||| ||||| ||||| || ||| |||||||||||||||||||||| Sbjct 473 ACAAAATATTGAGCCACGGGATTTATGGTGGCCAAGAGTTCGAAATTTATGAGATTAACT 532 Query 558 CAAATTCATGGAGGCAT-CTTGATGTCACTGTGGACTGCACCTTTATGTACCTTCAAAAC 616 |||||||||||||| || ||||||||||||||||||| | | ||| |||| || ||||| Sbjct 533 CAAATTCATGGAGG-ATTCTTGATGTCACTGTGGACTCCTC-TTT--GTACATTGAAAAC 588 Query 617 GTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGATGAAAAAGAGAAACAGCTTG-G 675 || ||||||||||| ||||||||||||||||||| ||||| ||| || |||| | | | | Sbjct 589 GTTTCTTTGAAGGGTAAGACTTACTGGTTTGCTACAGATGGAAATGATAAACCG-T-GCG 646 Query 676 -CTTAATCTTAATGATCAGTTTTGATTATACAACAGAAAGATTTGAACGTCTACATCTTC 734 | || |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 647 ACCTATTCTT---GATCTGTTTTGATTATACGACAGAAAGATTTGAACGTCTATGTCTTC 703 Query 735 CGTATAAGTAT-CC-TGATTTTCG-AA-ACATTGATTTTTCTGTTGTTAGAGACGAGAAA 790 ||||| || || || | ||||||| || |||| | | || ||||||| ||| |||||| Sbjct 704 CGTATCAG-ATTCCGT-ATTTTCGTAATACATC--TCTATCAGTTGTTAAAGAAGAGAAA 759 Query 791 CTTTCCGTGTTATTACAACGCAACC-TTACACCGAAGACAGAAATATGGGTGACAAATAA 849 ||||||||||||||||||| | || ||||| |||||||| | ||||||||||||||||| Sbjct 760 CTTTCCGTGTTATTACAAC-CTTCCCTTACATCGAAGACACAGATATGGGTGACAAATAA 818 Query 850 GATTGGTGAGACCAAAGTGTTGTCTTGGATCAAGGGCTTAACGGTGGATTTGAAGCCTGA 909 |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 819 GATTGGTGAGGCCAAAGTGTTGTCGTGGATCAAGTTTTTAACGGTGGATTTGAAGCCTGA 878 Query 910 GCTTAGAGATGGCATAAAATTCTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGT-ACTC 968 | ||| | ||||||||||||||||||||||||||||||| |||||||| |||| | | | Sbjct 879 GATTAAATATGGCATAAAATTCTTGGTCGATGAGGAGAACAAAGTCCTTGTGTATGAG-C 937 Query 969 AAAATAATGGATATAAAAGGCAAA--CTA--TGGTATACATCGTTGGAGAGGACAACAAA 1024 ||||| || | ||||| |||||| | | || ||||| ||||||||||||||||| || Sbjct 938 AAAATTTTGTA-ATAAACGGCAAAAACAACATGATATACGTCGTTGGAGAGGACAACGAA 996 Query 1025 GTTAGGGAAGTGGCT-TTTGGAGACGAATTCAAACCATT-TTGGTTGAATTATGTTCCAA 1082 ||||||||||||| | ||| ||| || ||| |||||||| || || | ||||||||||| Sbjct 997 GTTAGGGAAGTGG-TGTTTAGAGTCGGATTAAAACCATTATTCTTTTA-TTATGTTCCAA 1054 Query 1083 GTTTGACTCAAATCCAGCAAGGTGATGATTAA 1114 ||||||||||||||| ||||||| |||||||| Sbjct 1055 GTTTGACTCAAATCCGGCAAGGTAATGATTAA 1086 > AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related | chr1:8831724-8832760 FORWARD LENGTH=1037 Length=1037 Score = 483 bits (261), Expect = 2e-135 Identities = 815/1067 (76%), Gaps = 99/1067 (9%) Strand=Plus/Plus Query 26 ATGATGCCGGAACTTCCAGAAG-ATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCTAC 84 |||||| |||||||||||| || |||||||||| |||||||||| ||||||||| |||| Sbjct 1 ATGATGTCGGAACTTCCAG-AGCATTTGTTAGAAGAGATACTCTACCGCGTTCCAGCTAT 59 Query 85 ATCTTTGAAACAGTTACGATGTACTTGCAAACTATGGAACCGTTTATTCAACGATAAGAG 144 ||||||||||||||| | | |||||||||| ||||||| |||||||||| |||| ||| Sbjct 60 GTCTTTGAAACAGTTAGGGTCTACTTGCAAAGGATGGAACTGTTTATTCAAGGATAGGAG 119 Query 145 ATTCGCAAGAAAACACTTCCG-TAAAGCCCCAAGGCAATCTCTGATTCTCATGT-TGAAG 202 |||| ||||||||||||| | ||||| ||||| ||| | |||||||| ||||| | ||| Sbjct 120 ATTCACAAGAAAACACTT-GGATAAAGGCCCAAAGCAGTTTCTGATTCACATGTCTAAAG 178 Query 203 AATTTAGGGTTTTCTTCGATGAGCT-TCAATCTCCACCGAGTTTCACCA-ATAGAGATCA 260 ||||||| | |||||||| | || ||||||| || || || || || || ||| Sbjct 179 GGCTTAGGGTACGC-TCGATGAG-TGTCGATCTCCATAGACTTCCA-CATGTAAAGGTCA 235 Query 261 TTGGTGAACTTAACCTAATCGACCCT-CAT-T-CTAG-T-TC---AT----ATCTATTCA 308 | |||| ||| ||||||| ||||| || | |||| | || || ||| |||| Sbjct 236 CAGTTGAATTTACCCTAATCAACCCTAAATATCCTAGTTGTCTAGATCAAGATCAATTCG 295 Query 309 AGATCTATCAAAGCTATCACAGTTCAGACGGTTTATTGTTATGCG--T-CAACAACATGG 365 |||| ||| |||| | || || | | ||||| ||||||||||||| | | || || || Sbjct 296 AGATATAT-AAAG-TCTCTCACTGC-GACGGCTTATTGTTATGCGTCTGCGTCACCAAGG 352 Query 366 AGGGA-AGTACTAGGCTCGTGGTATGGAACCCGTGTACTGGTCAAACCAA-GTGGATCCA 423 | ||| | |||| |||||| |||||||||||||||||||||||||| ||| |||||| || Sbjct 353 A-GGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAA-CAAGGTGGATTCA 410 Query 424 ACACAGAAAGATAGGC-TACTTCTG-CACCTATTCTCTTGGATCCTACCAAGACAACAAA 481 || | || | | || | || || |||| |||| ||||||| || | | Sbjct 411 AC-C-----CAT-GACTTA--TATGACAACTATACTCTCGGATCCT------AC--C--A 451 Query 482 TCCGGAAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAA 535 ||||||||||||||| |||||| || | | || || ||| ||| ||| ||| Sbjct 452 -----AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAA 503 Query 536 TTCGAAATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTG 594 ||| |||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| Sbjct 504 TTCCAAATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTT 562 Query 595 CACCTTTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTA 650 || ||| ||| | || |||||||||||||||||||||||||||| |||||| Sbjct 563 CA-AATTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTA 621 Query 651 GAGATGAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACA 709 | | |||| ||||||||| ||||||| ||| |||||| ||||||||||||||| ||| Sbjct 622 GTGGTGAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACA 677 Query 710 GAAAGATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATT 767 |||||||||||||||||| ||||||| ||||||||||| | || | | ||| | || | Sbjct 678 GAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCT 734 Query 768 TT-TCTGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGA 824 | || ||||||||||| |||||||||||| |||||| |||||| || ||| | | | Sbjct 735 CTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAA 792 Query 825 AGACAGAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAG 883 || |||||||||||||||||||||||||||||||||| ||| ||| |||| |||| || | Sbjct 793 AGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATG 851 Query 884 GGCTTAACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTC 937 | |||| | |||||||| ||||| | | || | | | | || || ||||||||| Sbjct 852 GTCTTAGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTC 911 Query 938 GATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTAT 996 || ||| |||||| ||| |||||||| | | |||| | || | || || ||| | | Sbjct 912 GACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCAC 970 Query 997 GGTATACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTG 1043 |||| |||| ||||||||||||||||||| | |||||| ||||| Sbjct 971 GGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTG 1017 > AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related | chr1:8766060-8767096 FORWARD LENGTH=1037 Length=1037 Score = 477 bits (258), Expect = 1e-133 Identities = 815/1068 (76%), Gaps = 101/1068 (9%) Strand=Plus/Plus Query 26 ATGATGCCGGAACTTCCAGAAG-ATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCTAC 84 |||||| |||||||||||| || |||||||||| |||||||||| ||||||||| |||| Sbjct 1 ATGATGTCGGAACTTCCAG-AGCATTTGTTAGAAGAGATACTCTACCGCGTTCCAGCTAT 59 Query 85 ATCTTTGAAACAGTTACGATGTACTTGCAAACTATGGAACCGTTTATTCAACGATAAGAG 144 ||||||||||||||| | | |||||||||| ||||||| |||||||||| |||| ||| Sbjct 60 GTCTTTGAAACAGTTAGGGTCTACTTGCAAAGGATGGAACTGTTTATTCAAGGATAGGAG 119 Query 145 ATTCGCAAGAAAACACTTCCG-TAAAGCCCCAAGGCAATCTCTGATTCTCATGT-TGAAG 202 |||| ||||||||||||| | ||||| ||||| ||| | |||||||| ||||| | ||| Sbjct 120 ATTCACAAGAAAACACTT-GGATAAAGGCCCAAAGCAGTTTCTGATTCACATGTCTAAAG 178 Query 203 AATTTAGGGTTTTCTTCGATGAGCT-TCAATCTCCACCGAGTTTCACCA-AT-AGAGATC 259 ||||||| | |||||||| | || ||||||| || || || || | | || || Sbjct 179 GGCTTAGGGTACGC-TCGATGAG-TGTCGATCTCCATAGACTTCCA-CATGTAAAAG-TC 234 Query 260 ATTGGTGAACTTAACCTAATCGACCCT-CAT-T-CTAG-T-TC---AT----ATCTATTC 307 | | |||| ||| ||||||| ||||| || | |||| | || || ||| |||| Sbjct 235 ACAGTTGAATTTACCCTAATCAACCCTAAATATCCTAGTTGTCTAGATCAAGATCAATTC 294 Query 308 AAGATCTATCAAAGCTATCACAGTTCAGACGGTTTATTGTTATGCG--T-CAACAACATG 364 |||| ||| |||| | || || | | ||||| ||||||||||||| | | || || | Sbjct 295 GAGATATAT-AAAG-TCTCTCACTGC-GACGGCTTATTGTTATGCGTCTGCGTCACCAAG 351 Query 365 GAGGGA-AGTACTAGGCTCGTGGTATGGAACCCGTGTACTGGTCAAACCAA-GTGGATCC 422 || ||| | |||| |||||| |||||||||||||||||||||||||| ||| |||||| | Sbjct 352 GA-GGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAA-CAAGGTGGATTC 409 Query 423 AACACAGAAAGATAGGC-TACTTCTG-CACCTATTCTCTTGGATCCTACCAAGACAACAA 480 ||| | || | | || | || || |||| |||| ||||||| || | Sbjct 410 AAC-C-----CAT-GACTTA--TATGACAACTATACTCTCGGATCCT------AC--C-- 450 Query 481 ATCCGGAAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GA 534 | ||||||||||||||| |||||| || | | || || ||| ||| ||| || Sbjct 451 A-----AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGA 502 Query 535 ATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACT 593 |||| |||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| Sbjct 503 ATTCCAAATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACT 561 Query 594 GCACCTTTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCT 649 || ||| ||| | || |||||||||||||||||||||||||||| ||||| Sbjct 562 TCA-AATTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCT 620 Query 650 AGAGATGAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAAC 708 || | |||| ||||||||| ||||||| ||| |||||| ||||||||||||||| || Sbjct 621 AGTGGTGAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGAC 676 Query 709 AGAAAGATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGAT 766 ||||||||||||||||||| ||||||| ||||||||||| | || | | ||| | || Sbjct 677 AGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGC 733 Query 767 TTT-TCTGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCG 823 | | || ||||||||||| |||||||||||| |||||| |||||| || ||| | | Sbjct 734 TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCA 791 Query 824 AAGACAGAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAA 882 ||| |||||||||||||||||||||||||||||||||| ||| ||| |||| |||| || Sbjct 792 AAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCAT 850 Query 883 GGGCTTAACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGT 936 || |||| | |||||||| ||||| | | || | | | | || || |||||||| Sbjct 851 GGTCTTAGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGT 910 Query 937 CGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTA 995 ||| ||| |||||| ||| |||||||| | | |||| | || | || || ||| | | Sbjct 911 CGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCA 969 Query 996 TGGTATACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTG 1043 |||| |||| ||||||||||||||||||| | |||||| ||||| Sbjct 970 CGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTG 1017 > AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related | chr1:8803300-8804091 FORWARD LENGTH=792 Length=792 Score = 340 bits (184), Expect = 1e-92 Identities = 503/650 (77%), Gaps = 50/650 (8%) Strand=Plus/Plus Query 487 AAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAATTCGA 540 ||||||||||||||| |||||| || | | || || ||| ||| ||| |||||| | Sbjct 120 AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAATTCCA 176 Query 541 AATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTGCACCT 599 ||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| || Sbjct 177 AATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTTCA-AA 234 Query 600 TTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGAT 655 ||| ||| | || |||||||||||||||||||||||||||| ||||||| | | Sbjct 235 TTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGT 294 Query 656 GAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACAGAAAG 714 ||| ||||||||| ||||||| ||| |||||| ||||||||||||||| |||||||| Sbjct 295 GAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACAGAAAG 350 Query 715 ATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATTTT-TC 771 ||||||||||||| ||||||| ||||||||||| | || | | ||| | || | | || Sbjct 351 ATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCTCTATC 407 Query 772 TGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGAAGACA 829 ||||||||||| |||||||||||| |||||| |||||| || ||| | | ||| || Sbjct 408 CGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAAAGGCA 465 Query 830 GAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAGGGCTT 888 |||||||||||||||||||||||||||||||| ||| ||| |||| |||| || || ||| Sbjct 466 GAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATGGTCTT 524 Query 889 AACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTCGATGA 942 | | |||||||| ||||| | | || | | | | || || ||||||||||| || Sbjct 525 AGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGA 584 Query 943 GGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTATGGTAT 1001 | |||||| ||| |||||||| | | |||| | || | || || ||| | | |||| Sbjct 585 GAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCACGGTAC 643 Query 1002 ACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTGGAGACGAATTCAAAC-CA 1060 |||| ||||||||||||||||||| | |||||| ||||| || || || || | | Sbjct 644 ACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGAT-CAT-CTCT 701 Query 1061 -T--T-T-TGGTTGAATTATGTTCCAAGTTTGACTCAAATCCAGCAAGGT 1105 | | | || || | ||||||||||||||||||||||||| | |||||| Sbjct 702 GTAATGTATGTTTTA-TTATGTTCCAAGTTTGACTCAAATCTACCAAGGT 750 > AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related | chr1:8780844-8781536 FORWARD LENGTH=693 Length=693 Score = 340 bits (184), Expect = 1e-92 Identities = 503/650 (77%), Gaps = 50/650 (8%) Strand=Plus/Plus Query 487 AAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAATTCGA 540 ||||||||||||||| |||||| || | | || || ||| ||| ||| |||||| | Sbjct 48 AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAATTCCA 104 Query 541 AATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTGCACCT 599 ||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| || Sbjct 105 AATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTTCA-AA 162 Query 600 TTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGAT 655 ||| ||| | || |||||||||||||||||||||||||||| ||||||| | | Sbjct 163 TTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGT 222 Query 656 GAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACAGAAAG 714 ||| ||||||||| ||||||| ||| |||||| ||||||||||||||| |||||||| Sbjct 223 GAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACAGAAAG 278 Query 715 ATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATTTT-TC 771 ||||||||||||| ||||||| ||||||||||| | || | | ||| | || | | || Sbjct 279 ATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCTCTATC 335 Query 772 TGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGAAGACA 829 ||||||||||| |||||||||||| |||||| |||||| || ||| | | ||| || Sbjct 336 CGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAAAGGCA 393 Query 830 GAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAGGGCTT 888 |||||||||||||||||||||||||||||||| ||| ||| |||| |||| || || ||| Sbjct 394 GAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATGGTCTT 452 Query 889 AACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTCGATGA 942 | | |||||||| ||||| | | || | | | | || || ||||||||||| || Sbjct 453 AGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGA 512 Query 943 GGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTATGGTAT 1001 | |||||| ||| |||||||| | | |||| | || | || || ||| | | |||| Sbjct 513 GAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCACGGTAC 571 Query 1002 ACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTGGAGACGAATTCAAAC-CA 1060 |||| ||||||||||||||||||| | |||||| ||||| || || || || | | Sbjct 572 ACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGAT-CAT-CTCT 629 Query 1061 -T--T-T-TGGTTGAATTATGTTCCAAGTTTGACTCAAATCCAGCAAGGT 1105 | | | || || | ||||||||||||||||||||||||| | |||||| Sbjct 630 GTAATGTATGTTTTA-TTATGTTCCAAGTTTGACTCAAATCTACCAAGGT 678 > AT1G25141.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:8817678-8818382 FORWARD LENGTH=705 Length=705 Score = 322 bits (174), Expect = 5e-87 Identities = 453/582 (78%), Gaps = 41/582 (7%) Strand=Plus/Plus Query 487 AAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAATTCGA 540 ||||||||||||||| |||||| || | | || || ||| ||| ||| |||||| | Sbjct 120 AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAATTCCA 176 Query 541 AATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTGCACCT 599 ||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| || Sbjct 177 AATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTTCA-AA 234 Query 600 TTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGAT 655 ||| ||| | || |||||||||||||||||||||||||||| ||||||| | | Sbjct 235 TTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGT 294 Query 656 GAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACAGAAAG 714 ||| ||||||||| ||||||| ||| |||||| ||||||||||||||| |||||||| Sbjct 295 GAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACAGAAAG 350 Query 715 ATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATTTT-TC 771 ||||||||||||| ||||||| ||||||||||| | || | | ||| | || | | || Sbjct 351 ATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCTCTATC 407 Query 772 TGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGAAGACA 829 ||||||||||| |||||||||||| |||||| |||||| || ||| | | ||| || Sbjct 408 CGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAAAGGCA 465 Query 830 GAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAGGGCTT 888 |||||||||||||||||||||||||||||||| ||| ||| |||| |||| || || ||| Sbjct 466 GAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATGGTCTT 524 Query 889 AACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTCGATGA 942 | | |||||||| ||||| | | || | | | | || || ||||||||||| || Sbjct 525 AGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGA 584 Query 943 GGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTATGGTAT 1001 | |||||| ||| |||||||| | | |||| | || | || || ||| | | |||| Sbjct 585 GAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCACGGTAC 643 Query 1002 ACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTG 1043 |||| ||||||||||||||||||| | |||||| ||||| Sbjct 644 ACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTG 685 > AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | chr4:2136444-2137565 FORWARD LENGTH=1122 Length=1122 Score = 134 bits (72), Expect = 2e-30 Identities = 605/845 (72%), Gaps = 106/845 (13%) Strand=Plus/Plus Query 99 TACGATGTACTTGC-AAACTATGGAACCGTTTATTCAACGATA-AGAGATTCGCAAGAAA 156 |||||| ||||||| |||| |||||||| |||||||||||||| | |||||||||| ||| Sbjct 79 TACGATCTACTTGCAAAAC-ATGGAACCATTTATTCAACGATACA-AGATTCGCAA-AAA 135 Query 157 A-CACTTCCG-TAAAGCCCCAAGGCAATCTCTGA-TTCTCATG-T--TGAA-GAATTTAG 209 | ||||| || ||||||| ||| |||| ||| | ||||| | | || |||||||| Sbjct 136 AGCACTT-CGATAAAGCCGTAAGACAATATCT-AGCTCTCACGATCACAAAGGAATTTAG 193 Query 210 GGTTTTCTTCGATGAGCTTCAATCTCCACCGAGTTTCACCAATAGAGATCATTGGTGAAC 269 || ||| || | ||| ||| |||||| | | | || | | || ||||||| Sbjct 194 GG-TTTATTTGTTGAACTTTAATCTCTA-TG-G--------AT-G-TAACA--GGTGAAC 238 Query 270 TTAACCTAATCGACCCTCATTC-TAGTTCATATC-TATTCAAGATCTATCA--AAGCTAT 325 ||| | ||||| | ||||||| || || | | | || | ||| || | ||| | | Sbjct 239 TTAGCATAATCAATTCTCATTCTTA-TTTA-AACTTA-GC-TGATATA-GAGGAAG-TTT 292 Query 326 CACAGTTCAGACGGTTTATTGTTATGCGTCAACAACATGGAG-GGAAGTACTAGGCTCGT 384 || | | || || |||||||||| || | || || ||| || | |||| ||||| Sbjct 293 TGCACTAC-GATGGCTTATTGTTAT--GT-ACCATTAT-GAGAGGTTGCCCTAGACTCGT 347 Query 385 GGTATGGAACCCGTGTACTGGTCAAACCAAGTGGATCCAACA-CAGA---AAGATAGGCT 440 || |||||||||||||||||||||||||||||||| ||| | || | ||| | | || Sbjct 348 AGTTTGGAACCCGTGTACTGGTCAAACCAAGTGGATTCAA-ATCA-ATTCAAGTT-G-CT 403 Query 441 ACTTCTGCACCTATTCTCTTGGATCCTACCAAGACAACAAATCCGGAAATAATA---GCT 497 ||| | | | ||| |||||||||| | |||||||| ||| | ||||||||| ||| Sbjct 404 ACTACGG-A--TATGCTCTTGGATCTTGGCAAGACAAGGAATTCAGAAATAATAATAGCT 460 Query 498 ACAAAATATTGAGCCGTAGGATTAATG-GTTACCCAGAATTCGAAA-TT---TATGAGAT 552 |||||||||||||| || |||| | | || || || | ||| || | ||| || Sbjct 461 ACAAAATATTGAGCTATA--ATTATTTTGATATTCACAAG-CAAAACTTCGCTGTGACAT 517 Query 553 TAACTCAAATTCATGGAGGCATCTTGATGTCACTGTGGACTG-CACCTT--T-A-TG-TA 606 || || |||||||||||| ||||||| |||||| |||||| | | || | | || || Sbjct 518 AAAGTCTAATTCATGGAGGAATCTTGACGTCACTCCGGACTGTCGC-TTAGTGAATGCTA 576 Query 607 C-CTTCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAG--AT-GAAAAAG 662 ||| | | ||| |||||||| |||| |||||||| |||||| | || || || Sbjct 577 GTCTTTACAGCGTATCTTTGAAAGGAAGGACTTACTAATTTGCT-GCTCCATTGACAACC 635 Query 663 A------GAAACAG-CTTGGCTTAATCTTAATGATCAGTTTTGATTATACAACAGAAAGA 715 | | || || | || |||| | ||||||||||||||| |||||| ||| Sbjct 636 ATCTTTCGGAAGAGACACACCTCGG-CTTA--G-TCAGTTTTGATTATAAAACAGAGAGA 691 Query 716 TTTGAACGTCTACATCTTCCGTA-T---A-AGTATC--CTGATTTTCGAAACATTGATTT 768 ||||||||| | |||||||| | | | || | || || || | ||| ||| | Sbjct 692 TTTGAACGTATGTGTCTTCCGTCGTGTCACA-TAGCAACT-ATGTTGGGAACTTTGGCTC 749 Query 769 T-TCTGTTGTTAGAGACGAGAAACTT-TCCGTGTTATTACAA--CGCAACCTTACACCGA 824 | || ||||||| ||| || |||||| | ||||||||||| ||||| | ||| | | Sbjct 750 TCTCCGTTGTTAAAGAAGAAAAACTTATT-GTGTTATTACATGGCGCAAA-T-ACATCAA 806 Query 825 AGACAGAAATATGGGTGACAAATAAGATTGGTGAGACCAAAGTGTTGTCTTGGATCAAGG 884 |||||||||||||| | ||||||||||||| ||||||||||||| |||| |||| || || Sbjct 807 AGACAGAAATATGGCTAACAAATAAGATTGATGAGACCAAAGTGGTGTCGTGGAGCATGG 866 Query 885 GCTTA 889 |||| Sbjct 867 TCTTA 871 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55672404405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5