BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930679
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25460.1 | Symbols: | F-box and associated interaction doma... 1109 0.0
AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 483 2e-135
AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 477 1e-133
AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 340 1e-92
AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 340 1e-92
AT1G25141.1 | Symbols: | F-box associated ubiquitination effec... 322 5e-87
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 134 2e-30
> AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9231581-9232666 REVERSE LENGTH=1086
Length=1086
Score = 1109 bits (600), Expect = 0.0
Identities = 949/1112 (85%), Gaps = 46/1112 (4%)
Strand=Plus/Plus
Query 23 ATGATGATGCCGGAACTTCCAGAAGATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCT 82
||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGATGATGCCAGAACTTCCAGAGGATTTGTTAGTGGAGATACTCTGCCGCGTTCCGGCT 60
Query 83 ACATCTTTGAAACAG-TTACGATGTACTTGCAAACTATGGAACCGTTTATTCAACGATAA 141
||||||||||||| | ||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 61 ACATCTTTGAAAC-GATTACGATCTACTTGCAAACTATGGAACCATTTATACAACGATAA 119
Query 142 GAGATTCGCAAGAAAACACTTCCGTAAAGCCCCAAGGCAATCTCTGATTCTCATGTTGAA 201
||||||| ||| ||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 120 GAGATTCAAAAGCAAACACTGCCATAAAGCCCCAAGGCAATCTCTGATTCTCATGTGGAA 179
Query 202 GAATTTAGGGTTTTCTTCGATGAGCTTCAATCTCCACCGAGTTTCACCAATAGAGATCAT 261
|||||| || ||||||||||| ||| |||||||||| |||||||||| |||||| |||
Sbjct 180 GAATTTTGGTTTTTCTTCGATTAGCATCAATCTCCAAAGAGTTTCACCTATAGAGGTCAC 239
Query 262 TGGTGAACTTAACCTAATCGACCCTCATTCTAGTTCATATCTATTCAAGATCTATCAAAG 321
||||||||||||||||||||||| ||||||||||| | | | |||| || || || |
Sbjct 240 TGGTGAACTTAACCTAATCGACCATCATTCTAGTTTAGGTATGTTCAGGAACTCTCCATT 299
Query 322 CTATCACAGTTCAGACGGTTTATTGTTATGCGTCAACAACATGGAG-GGA--AGTACTAG 378
| ||| | ||| || |||||||||||||| |||| ||||| | | ||||||
Sbjct 300 ATGTCAAACTTC---TGGCTTATTGTTATGCGT---CAACGTGGAGAAAATTAATACTAG 353
Query 379 GCTCGTGGTATGGAACCCGTGTACTGGTCAAACCAAGTGGATCCAACACAGAAAGATAGG 438
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||
Sbjct 354 GCTCGTGGTATGGAACCCGTGTACTGGTAAAACCAAGTGGATTCAACACAGAAGGATGGG 413
Query 439 CTACTTCTGCACCTATTCTCTTGGATCCTACCAAGACAACAAATCCGGA-AATAATAGCT 497
|||| |||||| |||| |||||||||||||||||||||| |||||| || ||||||||||
Sbjct 414 CTACATCTGCAACTATGCTCTTGGATCCTACCAAGACAAAAAATCC-GACAATAATAGCT 472
Query 498 ACAAAATATTGAGCCGTAGGATTAATGGTTACCCAGAATTCGAAATTTATGAGATTAACT 557
||||||||||||||| ||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 473 ACAAAATATTGAGCCACGGGATTTATGGTGGCCAAGAGTTCGAAATTTATGAGATTAACT 532
Query 558 CAAATTCATGGAGGCAT-CTTGATGTCACTGTGGACTGCACCTTTATGTACCTTCAAAAC 616
|||||||||||||| || ||||||||||||||||||| | | ||| |||| || |||||
Sbjct 533 CAAATTCATGGAGG-ATTCTTGATGTCACTGTGGACTCCTC-TTT--GTACATTGAAAAC 588
Query 617 GTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGATGAAAAAGAGAAACAGCTTG-G 675
|| ||||||||||| ||||||||||||||||||| ||||| ||| || |||| | | | |
Sbjct 589 GTTTCTTTGAAGGGTAAGACTTACTGGTTTGCTACAGATGGAAATGATAAACCG-T-GCG 646
Query 676 -CTTAATCTTAATGATCAGTTTTGATTATACAACAGAAAGATTTGAACGTCTACATCTTC 734
| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 647 ACCTATTCTT---GATCTGTTTTGATTATACGACAGAAAGATTTGAACGTCTATGTCTTC 703
Query 735 CGTATAAGTAT-CC-TGATTTTCG-AA-ACATTGATTTTTCTGTTGTTAGAGACGAGAAA 790
||||| || || || | ||||||| || |||| | | || ||||||| ||| ||||||
Sbjct 704 CGTATCAG-ATTCCGT-ATTTTCGTAATACATC--TCTATCAGTTGTTAAAGAAGAGAAA 759
Query 791 CTTTCCGTGTTATTACAACGCAACC-TTACACCGAAGACAGAAATATGGGTGACAAATAA 849
||||||||||||||||||| | || ||||| |||||||| | |||||||||||||||||
Sbjct 760 CTTTCCGTGTTATTACAAC-CTTCCCTTACATCGAAGACACAGATATGGGTGACAAATAA 818
Query 850 GATTGGTGAGACCAAAGTGTTGTCTTGGATCAAGGGCTTAACGGTGGATTTGAAGCCTGA 909
|||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 819 GATTGGTGAGGCCAAAGTGTTGTCGTGGATCAAGTTTTTAACGGTGGATTTGAAGCCTGA 878
Query 910 GCTTAGAGATGGCATAAAATTCTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGT-ACTC 968
| ||| | ||||||||||||||||||||||||||||||| |||||||| |||| | | |
Sbjct 879 GATTAAATATGGCATAAAATTCTTGGTCGATGAGGAGAACAAAGTCCTTGTGTATGAG-C 937
Query 969 AAAATAATGGATATAAAAGGCAAA--CTA--TGGTATACATCGTTGGAGAGGACAACAAA 1024
||||| || | ||||| |||||| | | || ||||| ||||||||||||||||| ||
Sbjct 938 AAAATTTTGTA-ATAAACGGCAAAAACAACATGATATACGTCGTTGGAGAGGACAACGAA 996
Query 1025 GTTAGGGAAGTGGCT-TTTGGAGACGAATTCAAACCATT-TTGGTTGAATTATGTTCCAA 1082
||||||||||||| | ||| ||| || ||| |||||||| || || | |||||||||||
Sbjct 997 GTTAGGGAAGTGG-TGTTTAGAGTCGGATTAAAACCATTATTCTTTTA-TTATGTTCCAA 1054
Query 1083 GTTTGACTCAAATCCAGCAAGGTGATGATTAA 1114
||||||||||||||| ||||||| ||||||||
Sbjct 1055 GTTTGACTCAAATCCGGCAAGGTAATGATTAA 1086
> AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8831724-8832760 FORWARD LENGTH=1037
Length=1037
Score = 483 bits (261), Expect = 2e-135
Identities = 815/1067 (76%), Gaps = 99/1067 (9%)
Strand=Plus/Plus
Query 26 ATGATGCCGGAACTTCCAGAAG-ATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCTAC 84
|||||| |||||||||||| || |||||||||| |||||||||| ||||||||| ||||
Sbjct 1 ATGATGTCGGAACTTCCAG-AGCATTTGTTAGAAGAGATACTCTACCGCGTTCCAGCTAT 59
Query 85 ATCTTTGAAACAGTTACGATGTACTTGCAAACTATGGAACCGTTTATTCAACGATAAGAG 144
||||||||||||||| | | |||||||||| ||||||| |||||||||| |||| |||
Sbjct 60 GTCTTTGAAACAGTTAGGGTCTACTTGCAAAGGATGGAACTGTTTATTCAAGGATAGGAG 119
Query 145 ATTCGCAAGAAAACACTTCCG-TAAAGCCCCAAGGCAATCTCTGATTCTCATGT-TGAAG 202
|||| ||||||||||||| | ||||| ||||| ||| | |||||||| ||||| | |||
Sbjct 120 ATTCACAAGAAAACACTT-GGATAAAGGCCCAAAGCAGTTTCTGATTCACATGTCTAAAG 178
Query 203 AATTTAGGGTTTTCTTCGATGAGCT-TCAATCTCCACCGAGTTTCACCA-ATAGAGATCA 260
||||||| | |||||||| | || ||||||| || || || || || || |||
Sbjct 179 GGCTTAGGGTACGC-TCGATGAG-TGTCGATCTCCATAGACTTCCA-CATGTAAAGGTCA 235
Query 261 TTGGTGAACTTAACCTAATCGACCCT-CAT-T-CTAG-T-TC---AT----ATCTATTCA 308
| |||| ||| ||||||| ||||| || | |||| | || || ||| ||||
Sbjct 236 CAGTTGAATTTACCCTAATCAACCCTAAATATCCTAGTTGTCTAGATCAAGATCAATTCG 295
Query 309 AGATCTATCAAAGCTATCACAGTTCAGACGGTTTATTGTTATGCG--T-CAACAACATGG 365
|||| ||| |||| | || || | | ||||| ||||||||||||| | | || || ||
Sbjct 296 AGATATAT-AAAG-TCTCTCACTGC-GACGGCTTATTGTTATGCGTCTGCGTCACCAAGG 352
Query 366 AGGGA-AGTACTAGGCTCGTGGTATGGAACCCGTGTACTGGTCAAACCAA-GTGGATCCA 423
| ||| | |||| |||||| |||||||||||||||||||||||||| ||| |||||| ||
Sbjct 353 A-GGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAA-CAAGGTGGATTCA 410
Query 424 ACACAGAAAGATAGGC-TACTTCTG-CACCTATTCTCTTGGATCCTACCAAGACAACAAA 481
|| | || | | || | || || |||| |||| ||||||| || | |
Sbjct 411 AC-C-----CAT-GACTTA--TATGACAACTATACTCTCGGATCCT------AC--C--A 451
Query 482 TCCGGAAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAA 535
||||||||||||||| |||||| || | | || || ||| ||| ||| |||
Sbjct 452 -----AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAA 503
Query 536 TTCGAAATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTG 594
||| |||||||||| |||||||| |||||||||||| | | |||||| |||| ||||||
Sbjct 504 TTCCAAATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTT 562
Query 595 CACCTTTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTA 650
|| ||| ||| | || |||||||||||||||||||||||||||| ||||||
Sbjct 563 CA-AATTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTA 621
Query 651 GAGATGAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACA 709
| | |||| ||||||||| ||||||| ||| |||||| ||||||||||||||| |||
Sbjct 622 GTGGTGAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACA 677
Query 710 GAAAGATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATT 767
|||||||||||||||||| ||||||| ||||||||||| | || | | ||| | || |
Sbjct 678 GAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCT 734
Query 768 TT-TCTGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGA 824
| || ||||||||||| |||||||||||| |||||| |||||| || ||| | | |
Sbjct 735 CTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAA 792
Query 825 AGACAGAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAG 883
|| |||||||||||||||||||||||||||||||||| ||| ||| |||| |||| || |
Sbjct 793 AGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATG 851
Query 884 GGCTTAACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTC 937
| |||| | |||||||| ||||| | | || | | | | || || |||||||||
Sbjct 852 GTCTTAGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTC 911
Query 938 GATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTAT 996
|| ||| |||||| ||| |||||||| | | |||| | || | || || ||| | |
Sbjct 912 GACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCAC 970
Query 997 GGTATACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTG 1043
|||| |||| ||||||||||||||||||| | |||||| |||||
Sbjct 971 GGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTG 1017
> AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8766060-8767096 FORWARD LENGTH=1037
Length=1037
Score = 477 bits (258), Expect = 1e-133
Identities = 815/1068 (76%), Gaps = 101/1068 (9%)
Strand=Plus/Plus
Query 26 ATGATGCCGGAACTTCCAGAAG-ATTTGTTAGAGGAGATACTCTGCCGCGTTCCGGCTAC 84
|||||| |||||||||||| || |||||||||| |||||||||| ||||||||| ||||
Sbjct 1 ATGATGTCGGAACTTCCAG-AGCATTTGTTAGAAGAGATACTCTACCGCGTTCCAGCTAT 59
Query 85 ATCTTTGAAACAGTTACGATGTACTTGCAAACTATGGAACCGTTTATTCAACGATAAGAG 144
||||||||||||||| | | |||||||||| ||||||| |||||||||| |||| |||
Sbjct 60 GTCTTTGAAACAGTTAGGGTCTACTTGCAAAGGATGGAACTGTTTATTCAAGGATAGGAG 119
Query 145 ATTCGCAAGAAAACACTTCCG-TAAAGCCCCAAGGCAATCTCTGATTCTCATGT-TGAAG 202
|||| ||||||||||||| | ||||| ||||| ||| | |||||||| ||||| | |||
Sbjct 120 ATTCACAAGAAAACACTT-GGATAAAGGCCCAAAGCAGTTTCTGATTCACATGTCTAAAG 178
Query 203 AATTTAGGGTTTTCTTCGATGAGCT-TCAATCTCCACCGAGTTTCACCA-AT-AGAGATC 259
||||||| | |||||||| | || ||||||| || || || || | | || ||
Sbjct 179 GGCTTAGGGTACGC-TCGATGAG-TGTCGATCTCCATAGACTTCCA-CATGTAAAAG-TC 234
Query 260 ATTGGTGAACTTAACCTAATCGACCCT-CAT-T-CTAG-T-TC---AT----ATCTATTC 307
| | |||| ||| ||||||| ||||| || | |||| | || || ||| ||||
Sbjct 235 ACAGTTGAATTTACCCTAATCAACCCTAAATATCCTAGTTGTCTAGATCAAGATCAATTC 294
Query 308 AAGATCTATCAAAGCTATCACAGTTCAGACGGTTTATTGTTATGCG--T-CAACAACATG 364
|||| ||| |||| | || || | | ||||| ||||||||||||| | | || || |
Sbjct 295 GAGATATAT-AAAG-TCTCTCACTGC-GACGGCTTATTGTTATGCGTCTGCGTCACCAAG 351
Query 365 GAGGGA-AGTACTAGGCTCGTGGTATGGAACCCGTGTACTGGTCAAACCAA-GTGGATCC 422
|| ||| | |||| |||||| |||||||||||||||||||||||||| ||| |||||| |
Sbjct 352 GA-GGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAA-CAAGGTGGATTC 409
Query 423 AACACAGAAAGATAGGC-TACTTCTG-CACCTATTCTCTTGGATCCTACCAAGACAACAA 480
||| | || | | || | || || |||| |||| ||||||| || |
Sbjct 410 AAC-C-----CAT-GACTTA--TATGACAACTATACTCTCGGATCCT------AC--C-- 450
Query 481 ATCCGGAAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GA 534
| ||||||||||||||| |||||| || | | || || ||| ||| ||| ||
Sbjct 451 A-----AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGA 502
Query 535 ATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACT 593
|||| |||||||||| |||||||| |||||||||||| | | |||||| |||| ||||||
Sbjct 503 ATTCCAAATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACT 561
Query 594 GCACCTTTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCT 649
|| ||| ||| | || |||||||||||||||||||||||||||| |||||
Sbjct 562 TCA-AATTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCT 620
Query 650 AGAGATGAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAAC 708
|| | |||| ||||||||| ||||||| ||| |||||| ||||||||||||||| ||
Sbjct 621 AGTGGTGAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGAC 676
Query 709 AGAAAGATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGAT 766
||||||||||||||||||| ||||||| ||||||||||| | || | | ||| | ||
Sbjct 677 AGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGC 733
Query 767 TTT-TCTGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCG 823
| | || ||||||||||| |||||||||||| |||||| |||||| || ||| | |
Sbjct 734 TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCA 791
Query 824 AAGACAGAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAA 882
||| |||||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||
Sbjct 792 AAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCAT 850
Query 883 GGGCTTAACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGT 936
|| |||| | |||||||| ||||| | | || | | | | || || ||||||||
Sbjct 851 GGTCTTAGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGT 910
Query 937 CGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTA 995
||| ||| |||||| ||| |||||||| | | |||| | || | || || ||| | |
Sbjct 911 CGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCA 969
Query 996 TGGTATACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTG 1043
|||| |||| ||||||||||||||||||| | |||||| |||||
Sbjct 970 CGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTG 1017
> AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8803300-8804091 FORWARD LENGTH=792
Length=792
Score = 340 bits (184), Expect = 1e-92
Identities = 503/650 (77%), Gaps = 50/650 (8%)
Strand=Plus/Plus
Query 487 AAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAATTCGA 540
||||||||||||||| |||||| || | | || || ||| ||| ||| |||||| |
Sbjct 120 AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAATTCCA 176
Query 541 AATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTGCACCT 599
||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| ||
Sbjct 177 AATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTTCA-AA 234
Query 600 TTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGAT 655
||| ||| | || |||||||||||||||||||||||||||| ||||||| | |
Sbjct 235 TTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGT 294
Query 656 GAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACAGAAAG 714
||| ||||||||| ||||||| ||| |||||| ||||||||||||||| ||||||||
Sbjct 295 GAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACAGAAAG 350
Query 715 ATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATTTT-TC 771
||||||||||||| ||||||| ||||||||||| | || | | ||| | || | | ||
Sbjct 351 ATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCTCTATC 407
Query 772 TGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGAAGACA 829
||||||||||| |||||||||||| |||||| |||||| || ||| | | ||| ||
Sbjct 408 CGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAAAGGCA 465
Query 830 GAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAGGGCTT 888
|||||||||||||||||||||||||||||||| ||| ||| |||| |||| || || |||
Sbjct 466 GAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATGGTCTT 524
Query 889 AACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTCGATGA 942
| | |||||||| ||||| | | || | | | | || || ||||||||||| ||
Sbjct 525 AGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGA 584
Query 943 GGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTATGGTAT 1001
| |||||| ||| |||||||| | | |||| | || | || || ||| | | ||||
Sbjct 585 GAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCACGGTAC 643
Query 1002 ACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTGGAGACGAATTCAAAC-CA 1060
|||| ||||||||||||||||||| | |||||| ||||| || || || || | |
Sbjct 644 ACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGAT-CAT-CTCT 701
Query 1061 -T--T-T-TGGTTGAATTATGTTCCAAGTTTGACTCAAATCCAGCAAGGT 1105
| | | || || | ||||||||||||||||||||||||| | ||||||
Sbjct 702 GTAATGTATGTTTTA-TTATGTTCCAAGTTTGACTCAAATCTACCAAGGT 750
> AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8780844-8781536 FORWARD LENGTH=693
Length=693
Score = 340 bits (184), Expect = 1e-92
Identities = 503/650 (77%), Gaps = 50/650 (8%)
Strand=Plus/Plus
Query 487 AAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAATTCGA 540
||||||||||||||| |||||| || | | || || ||| ||| ||| |||||| |
Sbjct 48 AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAATTCCA 104
Query 541 AATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTGCACCT 599
||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| ||
Sbjct 105 AATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTTCA-AA 162
Query 600 TTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGAT 655
||| ||| | || |||||||||||||||||||||||||||| ||||||| | |
Sbjct 163 TTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGT 222
Query 656 GAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACAGAAAG 714
||| ||||||||| ||||||| ||| |||||| ||||||||||||||| ||||||||
Sbjct 223 GAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACAGAAAG 278
Query 715 ATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATTTT-TC 771
||||||||||||| ||||||| ||||||||||| | || | | ||| | || | | ||
Sbjct 279 ATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCTCTATC 335
Query 772 TGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGAAGACA 829
||||||||||| |||||||||||| |||||| |||||| || ||| | | ||| ||
Sbjct 336 CGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAAAGGCA 393
Query 830 GAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAGGGCTT 888
|||||||||||||||||||||||||||||||| ||| ||| |||| |||| || || |||
Sbjct 394 GAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATGGTCTT 452
Query 889 AACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTCGATGA 942
| | |||||||| ||||| | | || | | | | || || ||||||||||| ||
Sbjct 453 AGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGA 512
Query 943 GGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTATGGTAT 1001
| |||||| ||| |||||||| | | |||| | || | || || ||| | | ||||
Sbjct 513 GAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCACGGTAC 571
Query 1002 ACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTGGAGACGAATTCAAAC-CA 1060
|||| ||||||||||||||||||| | |||||| ||||| || || || || | |
Sbjct 572 ACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGAT-CAT-CTCT 629
Query 1061 -T--T-T-TGGTTGAATTATGTTCCAAGTTTGACTCAAATCCAGCAAGGT 1105
| | | || || | ||||||||||||||||||||||||| | ||||||
Sbjct 630 GTAATGTATGTTTTA-TTATGTTCCAAGTTTGACTCAAATCTACCAAGGT 678
> AT1G25141.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:8817678-8818382 FORWARD LENGTH=705
Length=705
Score = 322 bits (174), Expect = 5e-87
Identities = 453/582 (78%), Gaps = 41/582 (7%)
Strand=Plus/Plus
Query 487 AAATAATAGCTACAAAATATTGAGC-CGTA--GGATTAATGGTTAC--CCA-GAATTCGA 540
||||||||||||||| |||||| || | | || || ||| ||| ||| |||||| |
Sbjct 120 AAATAATAGCTACAATATATTG-GCACACACTGG-TT-TTGGCTACGACCACGAATTCCA 176
Query 541 AATTTATGAGATTAACTCAAATTCATGGAGGCA-TCTTGATGTCACTGTGGACTGCACCT 599
||||||||| |||||||| |||||||||||| | | |||||| |||| |||||| ||
Sbjct 177 AATTTATGAAATTAACTCCAATTCATGGAGG-ATTATTGATGCCACTTTGGACTTCA-AA 234
Query 600 TTA-TGTA-CCT--TCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGAT 655
||| ||| | || |||||||||||||||||||||||||||| ||||||| | |
Sbjct 235 TTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGT 294
Query 656 GAAAAAGAGAAACAGCTTGGCTTAAT-CTTAATGATCAGTTTTGATTATACAACAGAAAG 714
||| ||||||||| ||||||| ||| |||||| ||||||||||||||| ||||||||
Sbjct 295 GAAGAAGAGAAACGGCTTGGCA-AATTCTTAAT---CAGTTTTGATTATACGACAGAAAG 350
Query 715 ATTTGAACGTCTACATCTTCCGTATAAGTATCCT-GATTTTCGAAACAT-TGATTTT-TC 771
||||||||||||| ||||||| ||||||||||| | || | | ||| | || | | ||
Sbjct 351 ATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTG-TTAT-GCAAC-TCTGGCTCTATC 407
Query 772 TGTTGTTAGAGACGAGAAACTTTCCGTGTTATTACAACGC--AACCTTACACCGAAGACA 829
||||||||||| |||||||||||| |||||| |||||| || ||| | | ||| ||
Sbjct 408 CGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAA--TTAAATCAAAGGCA 465
Query 830 GAAATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCTTGGATCAAGGGCTT 888
|||||||||||||||||||||||||||||||| ||| ||| |||| |||| || || |||
Sbjct 466 GAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCGTGGAGCATGGTCTT 524
Query 889 AACGGTGGATTTGAAGCCTGAGC-TT--A--GAG-ATGGCATAAAATTCTTGGTCGATGA 942
| | |||||||| ||||| | | || | | | | || || ||||||||||| ||
Sbjct 525 AGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGA 584
Query 943 GGAGAAGAAAGTCCTCGTGTGTACTCAAAATAATGGATATAAAAGGCAAA-CTATGGTAT 1001
| |||||| ||| |||||||| | | |||| | || | || || ||| | | ||||
Sbjct 585 GAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA-GGAAAAACCACGGTAC 643
Query 1002 ACATCGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTTG 1043
|||| ||||||||||||||||||| | |||||| |||||
Sbjct 644 ACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTG 685
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 134 bits (72), Expect = 2e-30
Identities = 605/845 (72%), Gaps = 106/845 (13%)
Strand=Plus/Plus
Query 99 TACGATGTACTTGC-AAACTATGGAACCGTTTATTCAACGATA-AGAGATTCGCAAGAAA 156
|||||| ||||||| |||| |||||||| |||||||||||||| | |||||||||| |||
Sbjct 79 TACGATCTACTTGCAAAAC-ATGGAACCATTTATTCAACGATACA-AGATTCGCAA-AAA 135
Query 157 A-CACTTCCG-TAAAGCCCCAAGGCAATCTCTGA-TTCTCATG-T--TGAA-GAATTTAG 209
| ||||| || ||||||| ||| |||| ||| | ||||| | | || ||||||||
Sbjct 136 AGCACTT-CGATAAAGCCGTAAGACAATATCT-AGCTCTCACGATCACAAAGGAATTTAG 193
Query 210 GGTTTTCTTCGATGAGCTTCAATCTCCACCGAGTTTCACCAATAGAGATCATTGGTGAAC 269
|| ||| || | ||| ||| |||||| | | | || | | || |||||||
Sbjct 194 GG-TTTATTTGTTGAACTTTAATCTCTA-TG-G--------AT-G-TAACA--GGTGAAC 238
Query 270 TTAACCTAATCGACCCTCATTC-TAGTTCATATC-TATTCAAGATCTATCA--AAGCTAT 325
||| | ||||| | ||||||| || || | | | || | ||| || | ||| | |
Sbjct 239 TTAGCATAATCAATTCTCATTCTTA-TTTA-AACTTA-GC-TGATATA-GAGGAAG-TTT 292
Query 326 CACAGTTCAGACGGTTTATTGTTATGCGTCAACAACATGGAG-GGAAGTACTAGGCTCGT 384
|| | | || || |||||||||| || | || || ||| || | |||| |||||
Sbjct 293 TGCACTAC-GATGGCTTATTGTTAT--GT-ACCATTAT-GAGAGGTTGCCCTAGACTCGT 347
Query 385 GGTATGGAACCCGTGTACTGGTCAAACCAAGTGGATCCAACA-CAGA---AAGATAGGCT 440
|| |||||||||||||||||||||||||||||||| ||| | || | ||| | | ||
Sbjct 348 AGTTTGGAACCCGTGTACTGGTCAAACCAAGTGGATTCAA-ATCA-ATTCAAGTT-G-CT 403
Query 441 ACTTCTGCACCTATTCTCTTGGATCCTACCAAGACAACAAATCCGGAAATAATA---GCT 497
||| | | | ||| |||||||||| | |||||||| ||| | ||||||||| |||
Sbjct 404 ACTACGG-A--TATGCTCTTGGATCTTGGCAAGACAAGGAATTCAGAAATAATAATAGCT 460
Query 498 ACAAAATATTGAGCCGTAGGATTAATG-GTTACCCAGAATTCGAAA-TT---TATGAGAT 552
|||||||||||||| || |||| | | || || || | ||| || | ||| ||
Sbjct 461 ACAAAATATTGAGCTATA--ATTATTTTGATATTCACAAG-CAAAACTTCGCTGTGACAT 517
Query 553 TAACTCAAATTCATGGAGGCATCTTGATGTCACTGTGGACTG-CACCTT--T-A-TG-TA 606
|| || |||||||||||| ||||||| |||||| |||||| | | || | | || ||
Sbjct 518 AAAGTCTAATTCATGGAGGAATCTTGACGTCACTCCGGACTGTCGC-TTAGTGAATGCTA 576
Query 607 C-CTTCAAAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAG--AT-GAAAAAG 662
||| | | ||| |||||||| |||| |||||||| |||||| | || || ||
Sbjct 577 GTCTTTACAGCGTATCTTTGAAAGGAAGGACTTACTAATTTGCT-GCTCCATTGACAACC 635
Query 663 A------GAAACAG-CTTGGCTTAATCTTAATGATCAGTTTTGATTATACAACAGAAAGA 715
| | || || | || |||| | ||||||||||||||| |||||| |||
Sbjct 636 ATCTTTCGGAAGAGACACACCTCGG-CTTA--G-TCAGTTTTGATTATAAAACAGAGAGA 691
Query 716 TTTGAACGTCTACATCTTCCGTA-T---A-AGTATC--CTGATTTTCGAAACATTGATTT 768
||||||||| | |||||||| | | | || | || || || | ||| ||| |
Sbjct 692 TTTGAACGTATGTGTCTTCCGTCGTGTCACA-TAGCAACT-ATGTTGGGAACTTTGGCTC 749
Query 769 T-TCTGTTGTTAGAGACGAGAAACTT-TCCGTGTTATTACAA--CGCAACCTTACACCGA 824
| || ||||||| ||| || |||||| | ||||||||||| ||||| | ||| | |
Sbjct 750 TCTCCGTTGTTAAAGAAGAAAAACTTATT-GTGTTATTACATGGCGCAAA-T-ACATCAA 806
Query 825 AGACAGAAATATGGGTGACAAATAAGATTGGTGAGACCAAAGTGTTGTCTTGGATCAAGG 884
|||||||||||||| | ||||||||||||| ||||||||||||| |||| |||| || ||
Sbjct 807 AGACAGAAATATGGCTAACAAATAAGATTGATGAGACCAAAGTGGTGTCGTGGAGCATGG 866
Query 885 GCTTA 889
||||
Sbjct 867 TCTTA 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5