BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930681
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25460.1 | Symbols: | F-box and associated interaction doma... 1022 0.0
AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 340 1e-92
AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 335 6e-91
AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 316 2e-85
AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylgl... 316 2e-85
AT1G25141.1 | Symbols: | F-box associated ubiquitination effec... 287 2e-76
AT3G19560.1 | Symbols: | F-box family protein | chr3:6793311-6... 80.5 3e-14
> AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9231581-9232666 REVERSE LENGTH=1086
Length=1086
Score = 1022 bits (553), Expect = 0.0
Identities = 902/1062 (85%), Gaps = 58/1062 (5%)
Strand=Plus/Plus
Query 34 TTTGAAACGGTTACGATGTACTTGCAAACTATGGCACAATTTATTCAAGGATAAGAGATT 93
||||||||| ||||||| |||||||||||||||| || |||||| ||| |||||||||||
Sbjct 66 TTTGAAACGATTACGATCTACTTGCAAACTATGGAACCATTTATACAACGATAAGAGATT 125
Query 94 CGCAAGAAAACACTCCCGTAAAGCCTCAAGGCAATCTCTGATTCTCATGTTGAAGAATTT 153
| ||| ||||||| || ||||||| |||||||||||||||||||||||| |||||||||
Sbjct 126 CAAAAGCAAACACTGCCATAAAGCCCCAAGGCAATCTCTGATTCTCATGTGGAAGAATTT 185
Query 154 TGGGTTATCTTCGATGAGCATCAATCTACACAGAGTTTCACCTATAGAGGTCACTGGTGA 213
||| || |||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 186 TGGTTTTTCTTCGATTAGCATCAATCTCCAAAGAGTTTCACCTATAGAGGTCACTGGTGA 245
Query 214 ACTTAACCTAATCGACTC-TCATTCTAGTTTAGAATCTTTAGATCACTACAGGAACTAT- 271
|||||||||||||||| | |||||||||||||| | | | | | |||||||| |
Sbjct 246 ACTTAACCTAATCGAC-CATCATTCTAGTTTAG---GTAT-G-T---T-CAGGAACTCTC 295
Query 272 CAAAACTGTCACAGTTCAGACGGCTTATTGTTATGTGTCAACAATGGTATGGAATCCTCC 331
|| | ||||| | ||| |||||||||||||| |||||| ||| | |||
Sbjct 296 CATTA-TGTCAAACTTC---TGGCTTATTGTTATGCGTCAAC-GTGG-A--GAA------ 341
Query 332 ATGGAGGATAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGCCAAACCAAGTGGATC 391
| | |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 342 A---A--TTAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGTAAAACCAAGTGGATT 396
Query 392 CAACACAGAACGATGGGCTACATCTGCACCTATGCTCTTGGATCCTACCAAGACAACAAA 451
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 397 CAACACAGAAGGATGGGCTACATCTGCAACTATGCTCTTGGATCCTACCAAGACAAAAAA 456
Query 452 TCCGGA-AATAAGAGCTACAAAATATTGAG-CA--GGATATATGATGACCAAGAATTCGA 507
||| || ||||| ||||||||||||||||| || |||| |||| || |||||| |||||
Sbjct 457 TCC-GACAATAATAGCTACAAAATATTGAGCCACGGGATTTATGGTGGCCAAGAGTTCGA 515
Query 508 AATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTAACTGTGGATTCCTACAT 567
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |
Sbjct 516 AATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTCACTGTGGACTCCT-CTT 574
Query 568 -GTCCATTCAGAACGTGTCTTTGAAGGGAAAGACTTACTGGTTTGCTAGAGATGAAAAAG 626
|| |||| | ||||| ||||||||||| ||||||||||||||||||| ||||| ||| |
Sbjct 575 TGTACATTGAAAACGTTTCTTTGAAGGGTAAGACTTACTGGTTTGCTACAGATGGAAATG 634
Query 627 AGAAAC--TGCT-CCTATTCTTGATCTGTTTTGATTATACAACAGAAAGATTTGAACGTC 683
| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 635 ATAAACCGTGCGACCTATTCTTGATCTGTTTTGATTATACGACAGAAAGATTTGAACGTC 694
Query 684 TATGTCTACCTTATCCGCAT-CCATATCATGGTTATCAAAACGAGTATCTATCAGTTGTC 742
||||||| || |||| | || || ||| | || || | | | | ||||||||||||
Sbjct 695 TATGTCTTCCGTATCAG-ATTCCGTATTTTCGTAAT-A---C-A-TCTCTATCAGTTGTT 747
Query 743 AGAGAAGAGAAACTTTCTGTGTTACTACAACGTGAACTTACATCAAAGATAGAGATATGG 802
| ||||||||||||||| |||||| |||||| | |||||||| |||| | ||||||||
Sbjct 748 AAAGAAGAGAAACTTTCCGTGTTATTACAACCTTCCCTTACATCGAAGACACAGATATGG 807
Query 803 GTGACAAATAAGATTGGTGAGACCAAAGTGTTGTCGTGGATCAAGTTCGTAGCGGTGGAT 862
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 808 GTGACAAATAAGATTGGTGAGGCCAAAGTGTTGTCGTGGATCAAGTTTTTAACGGTGGAT 867
Query 863 TTGACGCCTGAGTTTAGATTTGGCATAAACTTCTTGGTCGATGAGGAGAAGAAAGTCCTC 922
|||| ||||||| ||| || ||||||||| |||||||||||||||||||| ||||||||
Sbjct 868 TTGAAGCCTGAGATTAAATATGGCATAAAATTCTTGGTCGATGAGGAGAACAAAGTCCTT 927
Query 923 GTGTGT-ACTCAAAATATTGTATTAAACGGCAAAAACA---TGGTATACATTGTTGGAGA 978
|||| | | |||||| ||||| ||||||||||||||| || ||||| | ||||||||
Sbjct 928 GTGTATGAG-CAAAATTTTGTAATAAACGGCAAAAACAACATGATATACGTCGTTGGAGA 986
Query 979 GGACAACAAAGTTAGGGAAGTGGCT-TTT-GAAGACGAATTCAAACCATTCTTGTTTTAT 1036
||||||| ||||||||||||||| | ||| || | || ||| |||||||| || ||||||
Sbjct 987 GGACAACGAAGTTAGGGAAGTGG-TGTTTAGA-GTCGGATTAAAACCATTATTCTTTTAT 1044
Query 1037 TATGTTCCAACTTTGACTCAAATCCATCAAGGTTATGATTAA 1078
|||||||||| |||||||||||||| |||||| ||||||||
Sbjct 1045 TATGTTCCAAGTTTGACTCAAATCCGGCAAGGTAATGATTAA 1086
> AT1G25209.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8831724-8832760 FORWARD LENGTH=1037
Length=1037
Score = 340 bits (184), Expect = 1e-92
Identities = 765/1026 (75%), Gaps = 117/1026 (11%)
Strand=Plus/Plus
Query 34 TTTGAAACGGTTACGATGTACTTGCAAACTATGGCACAATTTATTCAAGGATAAGAGATT 93
|||||||| |||| | | |||||||||| |||| || |||||||||||||| ||||||
Sbjct 63 TTTGAAACAGTTAGGGTCTACTTGCAAAGGATGGAACTGTTTATTCAAGGATAGGAGATT 122
Query 94 CGCAAGAAAACACTCCCG-TAAA-GCCTCAAGGCAATCTCTGATTCTCATGT-TGAAGAA 150
| |||||||||||| | |||| ||| ||| ||| | |||||||| ||||| | |||
Sbjct 123 CACAAGAAAACACT-TGGATAAAGGCC-CAAAGCAGTTTCTGATTCACATGTCTAAAGGG 180
Query 151 TTTTGGGTTATC-TTCGATGAGCATCAATCTACACAGAGTTTCACCTATAGAGGTCACTG 209
|| ||| || | |||||||| || |||| || ||| || ||| | || ||||||| |
Sbjct 181 CTTAGGG-TA-CGCTCGATGAGTGTCGATCTCCATAGACTTCCACATGTAAAGGTCACAG 238
Query 210 GTGAACTTAACCTAATCGACTCT-CAT-T-CTAG-T-T-TAGAATCTTTAGATCACTACA 263
|||| ||| ||||||| || || || | |||| | | ||| ||| |||||| | |
Sbjct 239 TTGAATTTACCCTAATCAACCCTAAATATCCTAGTTGTCTAG-ATC--AAGATCAATTC- 294
Query 264 GGA-ACTATCA-AAACTGTCACAGTTCAGACGGCTTATTGTTATGTGTCAACAATGGTAT 321
|| | ||| | ||| | || || | | ||||||||||||||||| || | | |
Sbjct 295 -GAGA-TAT-ATAAAGTCTCTCACTGC-GACGGCTTATTGTTATGCGT---C--T-G--- 341
Query 322 GGAATCCTCCATGGAGGATAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGCCAAAC 381
| | | ||| |||||| |||||| |||||| ||||||||||||||||||||| ||||
Sbjct 342 CG--T-CACCAAGGAGGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAA- 397
Query 382 CAA-GTGGATCCAACACAGAACGATGGGCTACATCTG-CACCTATGCTCTTGGATCCTAC 439
||| |||||| |||| | | || | || || || || |||| |||| ||||||||
Sbjct 398 CAAGGTGGATTCAAC-C----C-AT-GACT-TATATGACAACTATACTCTCGGATCCTA- 448
Query 440 CAAGACAACAAATCCGGAAATAAGAGCTACAAAATATT-G-A-GCA--GGATATAT-G-- 491
| | | |||| ||| |||||||| ||||| | | || || | | | |
Sbjct 449 C----C-A-AAAT-----AAT---AGCTACAATATATTGGCACACACTGG-T-TTTGGCT 492
Query 492 ATGACCAAGAATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTAA 551
| ||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||| |
Sbjct 493 ACGACCACGAATTCCAAATTTATGAAATTAACTCCAATTCATGGAGGATTATTGATGCCA 552
Query 552 CTGTGGA-TTCCTA-CA-TGTCCA-T--TCAG-AACGTGTCTTTGAAGGGAAAGACTTAC 604
|| |||| ||| | | || | | || | |||||||||||||||||||||||||
Sbjct 553 CTTTGGACTTCAAATTAGGGTATATTGGTC-GTGGCGTGTCTTTGAAGGGAAAGACTTAC 611
Query 605 TGGTTTGCTAGAGATGAAAAAGAGAAACTGCTC--CTA-TTCTTGATCTGTTTTGATTAT 661
||| ||||||| | |||| ||||||||| ||| | | ||||| ||| |||||||||||
Sbjct 612 TGGATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTAT 671
Query 662 ACAACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCATATCATGGTTAT-CA 720
|| |||||||||||||||||||||||||| || || | |||| | | | |||| ||
Sbjct 672 ACGACAGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCC-T-T---G-TTATGCA 725
Query 721 AAAC-GAGTATCTATCAGTTGTCAGAGAAGAGAAACTTTCTGTGTTA-CTACAACGTG-A 777
| | | | |||||| ||||| ||||||||||||||||| ||||| | ||||| | |
Sbjct 726 ACTCTG-GC-TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCG-CAACGCGGA 782
Query 778 ACTTACATCAAAGATAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGT 836
| ||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 783 A-TTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGT 840
Query 837 CGTGGATCAAGTTCGTAGCGGTGGATTTG-ACGCCTGA--GTT-TAGATTTGGCATA--- 889
|||||| || | || |||| |||||||| | |||| | ||| || || || | |
Sbjct 841 CGTGGAGCATGGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTA--TTGGGGAAAGCG 897
Query 890 -AACTT-CTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATATT-GT-ATT 945
|| || ||||||||| ||| |||||| ||| |||||||| | | |||||| | |
Sbjct 898 GAAGTTTCTTGGTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACC 957
Query 946 AAACGGCAAAAAC-ATGGTATACATTGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTT 1004
|| || |||||| | |||| ||||| ||||||||||||||||||| | |||||| ||
Sbjct 958 AA--GG-AAAAACCACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTT 1014
Query 1005 TTGAAG 1010
||||||
Sbjct 1015 TTGAAG 1020
> AT1G24792.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8766060-8767096 FORWARD LENGTH=1037
Length=1037
Score = 335 bits (181), Expect = 6e-91
Identities = 764/1026 (74%), Gaps = 117/1026 (11%)
Strand=Plus/Plus
Query 34 TTTGAAACGGTTACGATGTACTTGCAAACTATGGCACAATTTATTCAAGGATAAGAGATT 93
|||||||| |||| | | |||||||||| |||| || |||||||||||||| ||||||
Sbjct 63 TTTGAAACAGTTAGGGTCTACTTGCAAAGGATGGAACTGTTTATTCAAGGATAGGAGATT 122
Query 94 CGCAAGAAAACACTCCCG-TAAA-GCCTCAAGGCAATCTCTGATTCTCATGT-TGAAGAA 150
| |||||||||||| | |||| ||| ||| ||| | |||||||| ||||| | |||
Sbjct 123 CACAAGAAAACACT-TGGATAAAGGCC-CAAAGCAGTTTCTGATTCACATGTCTAAAGGG 180
Query 151 TTTTGGGTTATC-TTCGATGAGCATCAATCTACACAGAGTTTCACCTATAGAGGTCACTG 209
|| ||| || | |||||||| || |||| || ||| || ||| | || | ||||| |
Sbjct 181 CTTAGGG-TA-CGCTCGATGAGTGTCGATCTCCATAGACTTCCACATGTAAAAGTCACAG 238
Query 210 GTGAACTTAACCTAATCGACTCT-CAT-T-CTAG-T-T-TAGAATCTTTAGATCACTACA 263
|||| ||| ||||||| || || || | |||| | | ||| ||| |||||| | |
Sbjct 239 TTGAATTTACCCTAATCAACCCTAAATATCCTAGTTGTCTAG-ATC--AAGATCAATTC- 294
Query 264 GGA-ACTATCA-AAACTGTCACAGTTCAGACGGCTTATTGTTATGTGTCAACAATGGTAT 321
|| | ||| | ||| | || || | | ||||||||||||||||| || | | |
Sbjct 295 -GAGA-TAT-ATAAAGTCTCTCACTGC-GACGGCTTATTGTTATGCGT---C--T-G--- 341
Query 322 GGAATCCTCCATGGAGGATAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGCCAAAC 381
| | | ||| |||||| |||||| |||||| ||||||||||||||||||||| ||||
Sbjct 342 CG--T-CACCAAGGAGGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAA- 397
Query 382 CAA-GTGGATCCAACACAGAACGATGGGCTACATCTG-CACCTATGCTCTTGGATCCTAC 439
||| |||||| |||| | | || | || || || || |||| |||| ||||||||
Sbjct 398 CAAGGTGGATTCAAC-C----C-AT-GACT-TATATGACAACTATACTCTCGGATCCTA- 448
Query 440 CAAGACAACAAATCCGGAAATAAGAGCTACAAAATATT-G-A-GCA--GGATATAT-G-- 491
| | | |||| ||| |||||||| ||||| | | || || | | | |
Sbjct 449 C----C-A-AAAT-----AAT---AGCTACAATATATTGGCACACACTGG-T-TTTGGCT 492
Query 492 ATGACCAAGAATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTAA 551
| ||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||| |
Sbjct 493 ACGACCACGAATTCCAAATTTATGAAATTAACTCCAATTCATGGAGGATTATTGATGCCA 552
Query 552 CTGTGGA-TTCCTA-CA-TGTCCA-T--TCAG-AACGTGTCTTTGAAGGGAAAGACTTAC 604
|| |||| ||| | | || | | || | |||||||||||||||||||||||||
Sbjct 553 CTTTGGACTTCAAATTAGGGTATATTGGTC-GTGGCGTGTCTTTGAAGGGAAAGACTTAC 611
Query 605 TGGTTTGCTAGAGATGAAAAAGAGAAACTGCTC--CTA-TTCTTGATCTGTTTTGATTAT 661
||| ||||||| | |||| ||||||||| ||| | | ||||| ||| |||||||||||
Sbjct 612 TGGATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTAT 671
Query 662 ACAACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCATATCATGGTTAT-CA 720
|| |||||||||||||||||||||||||| || || | |||| | | | |||| ||
Sbjct 672 ACGACAGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCC-T-T---G-TTATGCA 725
Query 721 AAAC-GAGTATCTATCAGTTGTCAGAGAAGAGAAACTTTCTGTGTTA-CTACAACGTG-A 777
| | | | |||||| ||||| ||||||||||||||||| ||||| | ||||| | |
Sbjct 726 ACTCTG-GC-TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCG-CAACGCGGA 782
Query 778 ACTTACATCAAAGATAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGT 836
| ||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 783 A-TTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGT 840
Query 837 CGTGGATCAAGTTCGTAGCGGTGGATTTG-ACGCCTGA--GTT-TAGATTTGGCATA--- 889
|||||| || | || |||| |||||||| | |||| | ||| || || || | |
Sbjct 841 CGTGGAGCATGGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTA--TTGGGGAAAGCG 897
Query 890 -AACTT-CTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATATT-GT-ATT 945
|| || ||||||||| ||| |||||| ||| |||||||| | | |||||| | |
Sbjct 898 GAAGTTTCTTGGTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACC 957
Query 946 AAACGGCAAAAAC-ATGGTATACATTGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTT 1004
|| || |||||| | |||| ||||| ||||||||||||||||||| | |||||| ||
Sbjct 958 AA--GG-AAAAACCACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTT 1014
Query 1005 TTGAAG 1010
||||||
Sbjct 1015 TTGAAG 1020
> AT1G25053.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8803300-8804091 FORWARD LENGTH=792
Length=792
Score = 316 bits (171), Expect = 2e-85
Identities = 471/608 (77%), Gaps = 52/608 (9%)
Strand=Plus/Plus
Query 494 GACCAAGAATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTAACT 553
||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||| |||
Sbjct 163 GACCACGAATTCCAAATTTATGAAATTAACTCCAATTCATGGAGGATTATTGATGCCACT 222
Query 554 GTGGA-TTCCTA-CA-TGTCCA-T--TCAG-AACGTGTCTTTGAAGGGAAAGACTTACTG 606
|||| ||| | | || | | || | |||||||||||||||||||||||||||
Sbjct 223 TTGGACTTCAAATTAGGGTATATTGGTC-GTGGCGTGTCTTTGAAGGGAAAGACTTACTG 281
Query 607 GTTTGCTAGAGATGAAAAAGAGAAACTGCTC--CTA-TTCTTGATCTGTTTTGATTATAC 663
| ||||||| | |||| ||||||||| ||| | | ||||| ||| |||||||||||||
Sbjct 282 GATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATAC 341
Query 664 AACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCATATCATGGTTAT-CAAA 722
|||||||||||||||||||||||||| || || | |||| | | | |||| |||
Sbjct 342 GACAGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCC-T-T---G-TTATGCAAC 395
Query 723 AC-GAGTATCTATCAGTTGTCAGAGAAGAGAAACTTTCTGTGTTA-CTACAACGTG-AAC 779
| | | |||||| ||||| ||||||||||||||||| ||||| | ||||| | ||
Sbjct 396 TCTG-GC-TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCG-CAACGCGGAA- 451
Query 780 TTACATCAAAGATAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCG 838
||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 452 TTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCG 510
Query 839 TGGATCAAGTTCGTAGCGGTGGATTTG-ACGCCTGA--GTT-TAGATTTGGCATA----A 890
|||| || | || |||| |||||||| | |||| | ||| || || || | | |
Sbjct 511 TGGAGCATGGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTA--TTGGGGAAAGCGGA 567
Query 891 ACTT-CTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATATT-GT-ATTAA 947
| || ||||||||| ||| |||||| ||| |||||||| | | |||||| | | ||
Sbjct 568 AGTTTCTTGGTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA 627
Query 948 ACGGCAAAAAC-ATGGTATACATTGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTT 1006
|| |||||| | |||| ||||| ||||||||||||||||||| | |||||| ||||
Sbjct 628 --GG-AAAAACCACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTT 684
Query 1007 GAAGACGAATTCAAAC-CA-T--TCT-TGTTTTATTATGTTCCAACTTTGACTCAAATCC 1061
|||| || || || | | | | | |||||||||||||||||| |||||||||||||
Sbjct 685 GAAGTCGGAT-CAT-CTCTGTAATGTATGTTTTATTATGTTCCAAGTTTGACTCAAATCT 742
Query 1062 ATCAAGGT 1069
| ||||||
Sbjct 743 ACCAAGGT 750
> AT1G24879.1 | Symbols: | pseudogene of UDP-3-O-acyl N-acetylglucosamine
deacetylase family protein/F-box protein related
| chr1:8780844-8781536 FORWARD LENGTH=693
Length=693
Score = 316 bits (171), Expect = 2e-85
Identities = 471/608 (77%), Gaps = 52/608 (9%)
Strand=Plus/Plus
Query 494 GACCAAGAATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTAACT 553
||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||| |||
Sbjct 91 GACCACGAATTCCAAATTTATGAAATTAACTCCAATTCATGGAGGATTATTGATGCCACT 150
Query 554 GTGGA-TTCCTA-CA-TGTCCA-T--TCAG-AACGTGTCTTTGAAGGGAAAGACTTACTG 606
|||| ||| | | || | | || | |||||||||||||||||||||||||||
Sbjct 151 TTGGACTTCAAATTAGGGTATATTGGTC-GTGGCGTGTCTTTGAAGGGAAAGACTTACTG 209
Query 607 GTTTGCTAGAGATGAAAAAGAGAAACTGCTC--CTA-TTCTTGATCTGTTTTGATTATAC 663
| ||||||| | |||| ||||||||| ||| | | ||||| ||| |||||||||||||
Sbjct 210 GATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATAC 269
Query 664 AACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCATATCATGGTTAT-CAAA 722
|||||||||||||||||||||||||| || || | |||| | | | |||| |||
Sbjct 270 GACAGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCC-T-T---G-TTATGCAAC 323
Query 723 AC-GAGTATCTATCAGTTGTCAGAGAAGAGAAACTTTCTGTGTTA-CTACAACGTG-AAC 779
| | | |||||| ||||| ||||||||||||||||| ||||| | ||||| | ||
Sbjct 324 TCTG-GC-TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCG-CAACGCGGAA- 379
Query 780 TTACATCAAAGATAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCG 838
||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 380 TTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCG 438
Query 839 TGGATCAAGTTCGTAGCGGTGGATTTG-ACGCCTGA--GTT-TAGATTTGGCATA----A 890
|||| || | || |||| |||||||| | |||| | ||| || || || | | |
Sbjct 439 TGGAGCATGGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTA--TTGGGGAAAGCGGA 495
Query 891 ACTT-CTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATATT-GT-ATTAA 947
| || ||||||||| ||| |||||| ||| |||||||| | | |||||| | | ||
Sbjct 496 AGTTTCTTGGTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA 555
Query 948 ACGGCAAAAAC-ATGGTATACATTGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTT 1006
|| |||||| | |||| ||||| ||||||||||||||||||| | |||||| ||||
Sbjct 556 --GG-AAAAACCACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTT 612
Query 1007 GAAGACGAATTCAAAC-CA-T--TCT-TGTTTTATTATGTTCCAACTTTGACTCAAATCC 1061
|||| || || || | | | | | |||||||||||||||||| |||||||||||||
Sbjct 613 GAAGTCGGAT-CAT-CTCTGTAATGTATGTTTTATTATGTTCCAAGTTTGACTCAAATCT 670
Query 1062 ATCAAGGT 1069
| ||||||
Sbjct 671 ACCAAGGT 678
> AT1G25141.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:8817678-8818382 FORWARD LENGTH=705
Length=705
Score = 287 bits (155), Expect = 2e-76
Identities = 422/544 (78%), Gaps = 45/544 (8%)
Strand=Plus/Plus
Query 494 GACCAAGAATTCGAAATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTAACT 553
||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||| |||
Sbjct 163 GACCACGAATTCCAAATTTATGAAATTAACTCCAATTCATGGAGGATTATTGATGCCACT 222
Query 554 GTGGA-TTCCTA-CA-TGTCCA-T--TCAG-AACGTGTCTTTGAAGGGAAAGACTTACTG 606
|||| ||| | | || | | || | |||||||||||||||||||||||||||
Sbjct 223 TTGGACTTCAAATTAGGGTATATTGGTC-GTGGCGTGTCTTTGAAGGGAAAGACTTACTG 281
Query 607 GTTTGCTAGAGATGAAAAAGAGAAACTGCTC--CTA-TTCTTGATCTGTTTTGATTATAC 663
| ||||||| | |||| ||||||||| ||| | | ||||| ||| |||||||||||||
Sbjct 282 GATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATAC 341
Query 664 AACAGAAAGATTTGAACGTCTATGTCTACCTTATCCGCATCCATATCATGGTTAT-CAAA 722
|||||||||||||||||||||||||| || || | |||| | | | |||| |||
Sbjct 342 GACAGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCC-T-T---G-TTATGCAAC 395
Query 723 AC-GAGTATCTATCAGTTGTCAGAGAAGAGAAACTTTCTGTGTTA-CTACAACGTG-AAC 779
| | | |||||| ||||| ||||||||||||||||| ||||| | ||||| | ||
Sbjct 396 TCTG-GC-TCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCG-CAACGCGGAA- 451
Query 780 TTACATCAAAGATAGAGATATGGGTGACAAATAAGATTGGTGAGAC-CAAAGTGTTGTCG 838
||| ||||||| ||| ||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 452 TTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAA-GTGGTGTCG 510
Query 839 TGGATCAAGTTCGTAGCGGTGGATTTG-ACGCCTGA--GTT-TAGATTTGGCATA----A 890
|||| || | || |||| |||||||| | |||| | ||| || || || | | |
Sbjct 511 TGGAGCATGGTCTTAGCTTTGGATTTGCA-GCCTAAACGTTGTA--TTGGGGAAAGCGGA 567
Query 891 ACTT-CTTGGTCGATGAGGAGAAGAAAGTCCTCGTGTGTACTCAAAATATT-GT-ATTAA 947
| || ||||||||| ||| |||||| ||| |||||||| | | |||||| | | ||
Sbjct 568 AGTTTCTTGGTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAA 627
Query 948 ACGGCAAAAAC-ATGGTATACATTGTTGGAGAGGACAACAAAGTTAGGGAAGTGGCTTTT 1006
|| |||||| | |||| ||||| ||||||||||||||||||| | |||||| ||||
Sbjct 628 --GG-AAAAACCACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTT 684
Query 1007 GAAG 1010
||||
Sbjct 685 GAAG 688
> AT3G19560.1 | Symbols: | F-box family protein | chr3:6793311-6794802
FORWARD LENGTH=1267
Length=1267
Score = 80.5 bits (43), Expect = 3e-14
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 335 GAGGATAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGC-CAAACCAAGTGGATCCA 393
|||||||||||||||||||||||||||||||||| | |||| ||||||| ||| |||||
Sbjct 524 GAGGATAATACTAGGCTCGTGGTATGGAACCCGTATT-TGGCACAAACCAGGTGCATCCA 582
Query 394 AC 395
||
Sbjct 583 AC 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5