BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930688
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27180.1 | Symbols: | disease resistance protein (TIR-NBS-L... 235 1e-61
> AT1G27180.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr1:9439859-9446106 FORWARD LENGTH=4959
Length=4959
Score = 235 bits (127), Expect = 1e-61
Identities = 183/210 (87%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 15 GAGGGTATGCAACGAGGGGATGAA-ATCAG-TCCAACTCTCGACTTAGCCATGGATGAAT 72
||||||||| || ||| ||| || ||| | ||||| |||| | |||||| || || |
Sbjct 634 GAGGGTATGGAAAAAGGTGAT-AAGATC-GATCCAAGTCTCTTCGAAGCCATTGAGGACT 691
Query 73 CGGCGGCTTCCCTCATCATCTTATCCATTAACTACGCTAACTCTTCTTGGTGCCTAGATG 132
|||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 692 CGGCTGCCTCCGTCATCATCTTATCCACTAACTACGCTAACTCTTCTTGGTGCCTAGATG 751
Query 133 AATTAGCTTTGCTCTGCGATCTTAGATCATCTCTTAAACGTCCCATGATACATATCTTAT 192
|||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |
Sbjct 752 AATTAGCTTTGCTCTGCGATCTTAGATCGTCTCTGAAACGTCCCATGATACCTATCTTCT 811
Query 193 ATGGAGTCAATCCCTCCGATGTCCGCAAAC 222
|||||||||||||| |||||||||||||
Sbjct 812 ATGGAGTCAATCCCGAGGATGTCCGCAAAC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12416134003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5