BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930696

Length=227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18...   340    2e-93


> AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18839107-18844559 
FORWARD LENGTH=3569
Length=3569

 Score =  340 bits (184),  Expect = 2e-93
 Identities = 194/199 (97%), Gaps = 0/199 (0%)
 Strand=Plus/Plus

Query  2     TGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGTAAACGGAAACTGAAAAAAGA  61
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1442  TGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGA  1501

Query  62    TGGATCTGAAGGGAAAATGGTTGTCATTCCCTCTGTCGAAGAGCTTCAGCGAGAAGATCG  121
             |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct  1502  TGGATCTGAAGGGAAAATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCG  1561

Query  122   AGAGGCTTGGATTTCATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAG  181
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1562  AGAGGCTTGGATTTCATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAG  1621

Query  182   CATGACAAAGAAACTGCAA  200
             |||||||||||||||||||
Sbjct  1622  CATGACAAAGAAACTGCAA  1640



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10204353047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5