BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930697
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 327 6e-89
AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 259 2e-68
AT1G27280.1 | Symbols: | Paired amphipathic helix (PAH2) super... 82.4 5e-15
AT1G24220.1 | Symbols: | paired amphipathic helix repeat-conta... 65.8 5e-10
> AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8417495-8418566 FORWARD LENGTH=726
Length=726
Score = 327 bits (177), Expect = 6e-89
Identities = 436/556 (78%), Gaps = 37/556 (7%)
Strand=Plus/Plus
Query 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139
||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || |
Sbjct 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117
Query 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194
| ||| | || ||| ||| || | || | | | ||||| || | |||| | ||
Sbjct 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173
Query 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250
| |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| |
Sbjct 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231
Query 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310
|| ||||| | || | |||||||||| | |||||| |||| | ||||| |
Sbjct 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280
Query 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368
|||||||||||| || || |||| || ||| |||||||||| | |||||||||||||||
Sbjct 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338
Query 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGGAAATTCTTAA 428
|| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398
Query 429 GCTCTTGAACAATTTTAAAGCTCGCAGAGTCGATGCTGCTAGTGTCATTGCAAGGGTGGA 488
||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 399 GCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGA 458
Query 489 TGAACTCTTGAAAGATCAC-CAGAGCCTGCTTCTTGGTTTCAGTCTCTTTCTTTCAGCTA 547
|||||| ||||||||||| | || |||||| |||||||| || |||| ||||||||||
Sbjct 459 GGAACTCATGAAAGATCACTC-GAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTA 517
Query 548 ACAT-GAATTCTATCAGGAAGCCAAAGGGTTTGTTTCAGGGAGATGGTAGTCATGTAGTT 606
|| || || || || ||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 518 -CAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCAAGTAGTT 576
Query 607 AACTCAGTTCTTCAGA 622
|||||||||||||||
Sbjct 577 GACTCAGTTCTTCAGA 592
> AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9472077-9473149 FORWARD LENGTH=726
Length=726
Score = 259 bits (140), Expect = 2e-68
Identities = 439/576 (76%), Gaps = 49/576 (9%)
Strand=Plus/Plus
Query 73 TACTTCCTTGCTGTG-AGTGACGCATTACAGGATGA-TGAACCTGCAAAATTTCAAGAGT 130
|||||| ||||||| || | |||||| |||||| | |||||||| ||||| ||||||||
Sbjct 52 TACTTCGATGCTGTGAAG-GTCGCATTGCAGGAT-ACTGAACCTGAAAAATATCAAGAGT 109
Query 131 TTCTCAA-CATTTTTAGGGATTTTGA-AGCTCGTAGAGTC-G--AC-ACACCTACTGTCG 184
|| | || || |||| |||| | | ||| |||| || | | | | || || |
Sbjct 110 TTGT-AAGAATCTTTATTGATTAT-ACTGCTAATAGATTCGGTTTCGA-AACT-TTG-AG 164
Query 185 TTGCAAGAATGGAGGAACTATTGTA-TGATCACTTC-AATCTGCT-TCTTGGTTTAAATA 241
|||||| || ||||||| || | |||||| | |||||| | || ||||| ||||
Sbjct 165 -TGCAAGCTTGCAGGAACTCCTG-AGAGATCAC-GCGAATCTG-TGTCATGGTTCAAATG 220
Query 242 CCTTCCTTCCCGTTGA-GTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAG-TCCGG 299
||| ||| || || | ||| || | |||||||||| | |||||| |||| | |
Sbjct 221 TCTTACTT-CCTTTTAGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAGTTTC-- 277
Query 300 CCAATTTCAA-AAGGTGGTTGGAAAAAGGC-TACCGCC-GC-----CGAAGCCTACCATG 351
| | |||| ||||||||||||| || || |||| || || || ||||||||||
Sbjct 278 AC-A--TCAATAAGGTGGTTGGAAGAA-GCGTACCACCGGCGGTGGCGGTGCCTACCATG 333
Query 352 GGTGATGCGACTTCATATATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAG 411
| |||||||||||| || || |||| |||||||||||||||||||||||||||||||
Sbjct 334 GATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAA 393
Query 412 TATGA-GGAAATT-CTTAAGCTCTTGAACA-ATTTTAAAGCTCGCAGAGTCGATGCTGCT 468
||| | ||||||| || |||||||||| | || |||||||||| ||| || |||| |||
Sbjct 394 TAT-ATGGAAATTACT-AAGCTCTTGA-CTGATCTTAAAGCTCGTAGAATCAATGCCGCT 450
Query 469 AGTGTCATTGCAAGGGTGGATGAACTCTTGAAAGATCACCAGAGCCTGCTTCTTGGTTTC 528
||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||
Sbjct 451 AGTGTCATTGCAAGGATGGAGGAACTCTTGAAAGATCACTTGAATCTGCTTCTTGGTTTC 510
Query 529 AGTCTCTTTCTTTCAGCTAACATGAA--TTCTATCAGGAAGCCAAAGGGTTTGTTTCAGG 586
|| |||| |||||| ||| || | | || ||||| ||||| |||| ||||| ||
Sbjct 511 TGTGTCTTCCTTTCACCTA-CAAGGAGGTT-TATCACGAAGCTTAAGGCAAGGTTTCTGG 568
Query 587 GAGATGGTAGTCATGTAGTTAACTCAGTTCTTCAGA 622
| ||||||||||| |||||| |||||||||| ||||
Sbjct 569 GCGATGGTAGTCAAGTAGTTGACTCAGTTCTCCAGA 604
> AT1G27280.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9474027-9474990 FORWARD LENGTH=678
Length=678
Score = 82.4 bits (44), Expect = 5e-15
Identities = 136/180 (76%), Gaps = 8/180 (4%)
Strand=Plus/Plus
Query 344 CTACCATGGGTGATGCGACTTCATATATC-GCTGCTCTGAAGGAAGCATTTCATGATGAA 402
|||| || | ||||||| |||||| ||| | || | |||||||||||||||||||||
Sbjct 230 CTACTATTGATGATGCGGTTTCATACATCAAC-ACTGTCAAGGAAGCATTTCATGATGAA 288
Query 403 CCTGCAAAGTATGAGGAAATTCTTA-AGCTCTTGAACAATTTTAAAGC-TCGCAG-AGTC 459
|||||||||||| | || || || ||||||| | || | | | | | | | |
Sbjct 289 CCTGCAAAGTATTACGAGTTT-TTCCAGCTCTTTTATGATATCAG-GTATAG-ATTAATT 345
Query 460 GATGCTGCTAGTGTCATTGCAAGGGTGGATGAACTCTTGAAAGATCACCAGAGCCTGCTT 519
|||| |||| ||| |||| |||||||||| ||||||||||||| |||| ||| ||||||
Sbjct 346 GATGTTGCTGGTGGCATTACAAGGGTGGAGGAACTCTTGAAAGCTCACAAGAATCTGCTT 405
> AT1G24220.1 | Symbols: | paired amphipathic helix repeat-containing
protein | chr1:8578658-8582413 REVERSE LENGTH=2235
Length=2235
Score = 65.8 bits (35), Expect = 5e-10
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 579 GTTTCAGGGAGATGGTAGTCATGTAGTTAACTCAGTTCTTCAGA 622
||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 2034 GTTTCAGGGCTATGGTAGTCATGTAGTTAACTCAGTTCTCCAGA 2077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5