BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930698
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 172 2e-42
AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 117 1e-25
AT1G27280.1 | Symbols: | Paired amphipathic helix (PAH2) super... 65.8 4e-10
> AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8417495-8418566 FORWARD LENGTH=726
Length=726
Score = 172 bits (93), Expect = 2e-42
Identities = 294/386 (76%), Gaps = 33/386 (9%)
Strand=Plus/Plus
Query 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139
||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || |
Sbjct 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117
Query 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194
| ||| | || ||| ||| || | || | | | ||||| || | |||| | ||
Sbjct 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173
Query 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250
| |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| |
Sbjct 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231
Query 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310
|| ||||| | || | |||||||||| | |||||| |||| | ||||| |
Sbjct 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280
Query 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368
|||||||||||| || || |||| || ||| |||||||||| | |||||||||||||||
Sbjct 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338
Query 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGAAAATTCTTAA 428
|| |||| ||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398
Query 429 GCTCTTGAACAATTTTAAAGCTCGCA 454
||||||||| |||||||||||||||
Sbjct 399 GCTCTTGAATGATTTTAAAGCTCGCA 424
> AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9472077-9473149 FORWARD LENGTH=726
Length=726
Score = 117 bits (63), Expect = 1e-25
Identities = 298/404 (74%), Gaps = 45/404 (11%)
Strand=Plus/Plus
Query 73 TACTTCCTTGCTGTG-AGTGACGCATTACAGGATGA-TGAACCTGCAAAATTTCAAGAGT 130
|||||| ||||||| || | |||||| |||||| | |||||||| ||||| ||||||||
Sbjct 52 TACTTCGATGCTGTGAAG-GTCGCATTGCAGGAT-ACTGAACCTGAAAAATATCAAGAGT 109
Query 131 TTCTCAA-CATTTTTAGGGATTTTGA-AGCTCGTAGAGTC-G--AC-ACACCTACTGTCG 184
|| | || || |||| |||| | | ||| |||| || | | | | || || |
Sbjct 110 TTGT-AAGAATCTTTATTGATTAT-ACTGCTAATAGATTCGGTTTCGA-AACT-TTG-AG 164
Query 185 TTGCAAGAATGGAGGAACTATTGTA-TGATCACTTC-AATCTGCT-TCTTGGTTTAAATA 241
|||||| || ||||||| || | |||||| | |||||| | || ||||| ||||
Sbjct 165 -TGCAAGCTTGCAGGAACTCCTG-AGAGATCAC-GCGAATCTG-TGTCATGGTTCAAATG 220
Query 242 CCTTCCTTCCCGTTGA-GTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAG-TCCGG 299
||| ||| || || | ||| || | |||||||||| | |||||| |||| | |
Sbjct 221 TCTTACTT-CCTTTTAGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAGTTTC-- 277
Query 300 CCAATTTCAA-AAGGTGGTTGGAAAAAGGC-TACCGCC-GC-----CGAAGCCTACCATG 351
| | |||| ||||||||||||| || || |||| || || || ||||||||||
Sbjct 278 AC-A--TCAATAAGGTGGTTGGAAGAA-GCGTACCACCGGCGGTGGCGGTGCCTACCATG 333
Query 352 GGTGATGCGACTTCATATATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAG 411
| |||||||||||| || || |||| |||||||||||||||||||||||||||||||
Sbjct 334 GATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAA 393
Query 412 TATGA-GAAAATT-CTTAAGCTCTTGAACA-ATTTTAAAGCTCG 452
||| | | ||||| || |||||||||| | || ||||||||||
Sbjct 394 TAT-ATGGAAATTACT-AAGCTCTTGA-CTGATCTTAAAGCTCG 434
> AT1G27280.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9474027-9474990 FORWARD LENGTH=678
Length=678
Score = 65.8 bits (35), Expect = 4e-10
Identities = 60/72 (83%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 344 CTACCATGGGTGATGCGACTTCATATATC-GCTGCTCTGAAGGAAGCATTTCATGATGAA 402
|||| || | ||||||| |||||| ||| | || | |||||||||||||||||||||
Sbjct 230 CTACTATTGATGATGCGGTTTCATACATCAAC-ACTGTCAAGGAAGCATTTCATGATGAA 288
Query 403 CCTGCAAAGTAT 414
||||||||||||
Sbjct 289 CCTGCAAAGTAT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22806302738
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5