BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930701
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22740.2 | Symbols: SUVH6 | SU(VAR)3-9 homolog 6 | chr2:9662... 187 5e-47
> AT2G22740.2 | Symbols: SUVH6 | SU(VAR)3-9 homolog 6 | chr2:9662638-9666981
REVERSE LENGTH=2588
Length=2588
Score = 187 bits (101), Expect = 5e-47
Identities = 183/219 (84%), Gaps = 19/219 (9%)
Strand=Plus/Plus
Query 1 TTGTGAATGGAAATAGGTGTTA-TATATGGAGAATAATAAGATAGTACATAAAGAGACAT 59
|||||||||||||| || | | | |||||||||| | ||| ||||||| |||| ||
Sbjct 120 TTGTGAATGGAAAT-GG-G--AGT-TATGGAGAAT--T-TGATGGTACATACGGAGATAT 171
Query 60 CAAAGATTAAGTCGT-TGAGCAATGGAGAGGTTTTAGTGGAGAAACGAGGAGTGTCAGTT 118
||||| ||||||| | ||||||||| || | ||||||||||||||||||||||||
Sbjct 172 CAAAGGTTAAGTC-TCAGAGCAATGGTGA-G-----GTGGAGAAACGAGGAGTGTCAGTT 224
Query 119 TTGGAGAATGGAGGTGTTTGCAAGATTGATCGTATGACAGGGCTAAAGTTCAAGCGCCGG 178
||||||||||| |||||||||||| ||||||| |||| ||||| ||||| ||||| |||
Sbjct 225 TTGGAGAATGGTGGTGTTTGCAAGCTTGATCGAATGAGTGGGCTTAAGTTTAAGCGTCGG 284
Query 179 AATGTTTTTGCTGTGAGGGA-TTTCCCACCGGGTTGTGG 216
|| ||||||||||||||||| ||||| ||||||||||||
Sbjct 285 AAGGTTTTTGCTGTGAGGGACTTTCC-ACCGGGTTGTGG 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14074969720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5