BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930707
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25470.1 | Symbols: | bacterial hemolysin-related | chr3:92... 1482 0.0
> AT3G25470.1 | Symbols: | bacterial hemolysin-related | chr3:9232919-9235213
FORWARD LENGTH=1217
Length=1217
Score = 1482 bits (802), Expect = 0.0
Identities = 900/948 (95%), Gaps = 4/948 (0%)
Strand=Plus/Plus
Query 2 CCAAGG-AGAAAGTAGTAAGATGGGATTTCATGTTCTTAGACCTCCCATAGCTTTACGCA 60
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CCAAGGAAG-AAGTAGAAAGATGGGATTTCATGTTCTTAGACCTCCCATAGCTTTACGCA 160
Query 61 GTTCTCTCCTCGGCTTCTTATCCAAATCTCACAATCCTCTTCTCTCTGGGAGATGGGTT- 119
| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 161 GCTCTCTCCTCGGCTTCTTATCCAAATCACACAATCCTCTTCTCCCCGGGAGATGGGTTC 220
Query 120 AGAGCCGGAGAATGCAGTACCATGAGATGTTTTGCTTCTGCTACTCGTGGGaaaaacaaa 179
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 221 A-AGCTGGAGAATGCAGTACCATGAGATGTTTTGCTTCTGCTACTCGTGGCAAAAACAAA 279
Query 180 aaaCAGAGACTAGATGAGGCATGTGTTGAAAGGTTTAACGAATACAGTCGCACACTAATA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 AAACAGAGACTAGATGAGGCATGTGTTGAAAGGTTTAACGAATACAGTCGCACACTAATA 339
Query 240 CAATCATGGATCATACAAGGCAAAGTTCTTGTGGATGGGAGAAGAGTTATTAAAGCTGGA 299
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 CAATCGTGGATTATGCAAGGCAAAGTTCTTGTGGATGGGAGAAGAGTTATTAAAGCTGGA 399
Query 300 ATGCCTGTATCGAATACTGCAGCTATAAAGATCACAGCTGAGGTTCCAAAATTTGTATGT 359
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 ATGCCTGTATCTACTACTGCAGCTATAAAGATCACAGCTGAGGTTCCAAAATTTGTATGT 459
Query 360 AGAGGTGGACTCAAGCTGGAAGCTGCACTTGAGAAGCTAGATGTTGATGTTTCTGAGAAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AGAGGTGGACTCAAGCTGGAAGCTGCACTTGAGAAGCTAGATGTTGATGTTTCTGAGAAA 519
Query 420 GTAGTTCTTGATTCAGGACTTTCTACAGGAGGGTTTACGGATTGTTTGCTTCGATATGGT 479
|||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 520 GTAGTTCTTGATGCAGGACTTTCTACTGGAGGGTTTACGGATTGTTTGCTACGTTATGGT 579
Query 480 GCAGCTCATGTTTATGGCGTAGATGTTGGTTACGGTCAGGTAGCTGATAAAATCCGCAAT 539
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 580 GCTGCTCATGTTTATGGCGTAGATGTTGGTTACGGTCAGGTAGCTGACAAAATTCGCAAT 639
Query 540 GATAAGCGAGTGACCGTTATAGAAAGAACAAATCTGAGATACCTCCCTGGACTCCCACAA 599
|||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 640 GATAAGAAAGTGACTGTTATAGAAAGGACAAATCTGAGATACCTCCCAGGACTCCCACAA 699
Query 600 AAAGTCGATGTAGTGACTCTTGACCTCTCGTTCATTTCTATTCTAAAGGTGATGCCAGCT 659
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 700 AAAGTCGATGTAGTGACGCTTGACCTCTCTTTCATTTCCATTCTTAAGGTGATGCCAGCT 759
Query 660 ATTATGAATGTGATGAAAGAAGATGCAACTTTAGTTACTCTTGTTAAACCCCAATTTGAA 719
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 760 ATTATGAATGTGATGAAAGAAGATGCGACTTTAGTTACCCTTGTTAAACCCCAATTTGAA 819
Query 720 GCTCGAAGACAACAGGTCGGGAAGGGTGGCATAGTGAGAGATCCCGAAGTACATCAGGAG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 820 GCTCGAAGACAACAGGTCGGGAAGGGTGGCATAGTGAGAGATCCCGAAGTACATCAAGAG 879
Query 780 GTTCTTGAGAAGATAATAAATGGTGTTGAGCGCTATGGATTTACCAACAAAGGCTTTATC 839
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 880 GTTCTTGAGAAGATAATAAACGGTGTTGAGCGCTATGGATTTACCAACAAAGGCTTTATC 939
Query 840 GAATCTCCCATAAAGGGCGCTGAGGGAAATATAGAGTTCTTGGTTTGCTTCAACCGAGGG 899
|||||||||||||||||||| || ||||| ||||||||||||| |||||| || ||||||
Sbjct 940 GAATCTCCCATAAAGGGCGCAGACGGAAACATAGAGTTCTTGGCTTGCTTTAATCGAGGG 999
Query 900 ACAGTAAAACCCGAAGGCGAAGAATACTAGACTTGCATTCCATTGCTG 947
||||||||||| |||| ||||||||| ||||||| |||||||| |||
Sbjct 1000 ACAGTAAAACCTGAAGCCGAAGAATAGTAGACTTATATTCCATTACTG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5