BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930709

Length=1261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10190.1 | Symbols:  | F-box and associated interaction doma...   215    9e-55


> AT4G10190.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:6350928-6352031 FORWARD LENGTH=1104
Length=1104

 Score =  215 bits (116),  Expect = 9e-55
 Identities = 236/293 (81%), Gaps = 11/293 (4%)
 Strand=Plus/Plus

Query  911   TATAAATGTATGGATGGCAACTAAGATTGAGAGTAAC-GGAGCCACGTCATGGATCAAGT  969
             |||| |||||||||| ||||||| |||||||||| || |||||  ||||||||| |||||
Sbjct  813   TATAGATGTATGGATTGCAACTACGATTGAGAGT-ACGGGAGCTGCGTCATGGAGCAAGT  871

Query  970   TTCTATCAGTT-AATTTTGCGAATATCCACAAGCCTTTTTGCTTTCATAATGGGATGAAT  1028
             | ||||||||| || || || ||| || || ||| | |||||||  ||| | ||||||||
Sbjct  872   TCCTATCAGTTGAA-TTAGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAAT  930

Query  1029  TTCTTGGTCGACCCGGAGAACAAAGTTTT--TGTGT-GTCCCGGTAAAAATGGGTTCTCC  1085
             ||||||||||||| | |||||||||||||  ||| | ||   |||||  || || |||||
Sbjct  931   TTCTTGGTCGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCC  990

Query  1086  AA-GACCTTCTTAAACATTTTGGGAGAAAATAAATCCATACAAGTGGAACACCAAGATGC  1144
             || |   |||||  || || |||||||  ||||||  ||||||||||| || || ||| |
Sbjct  991   AATG-TTTTCTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTC  1049

Query  1145  AGAATCT-GTATGCTCACTTCTCGTCAATTATGTTCCAACTTTGGTTCAAATC  1196
             ||  ||| | |||||||||| |||||||||||||||||||||||||||| |||
Sbjct  1050  AGTGTCTAG-ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC  1101



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61997673075


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5