BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930709 Length=1261 Score E Sequences producing significant alignments: (Bits) Value AT4G10190.1 | Symbols: | F-box and associated interaction doma... 215 9e-55 > AT4G10190.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:6350928-6352031 FORWARD LENGTH=1104 Length=1104 Score = 215 bits (116), Expect = 9e-55 Identities = 236/293 (81%), Gaps = 11/293 (4%) Strand=Plus/Plus Query 911 TATAAATGTATGGATGGCAACTAAGATTGAGAGTAAC-GGAGCCACGTCATGGATCAAGT 969 |||| |||||||||| ||||||| |||||||||| || ||||| ||||||||| ||||| Sbjct 813 TATAGATGTATGGATTGCAACTACGATTGAGAGT-ACGGGAGCTGCGTCATGGAGCAAGT 871 Query 970 TTCTATCAGTT-AATTTTGCGAATATCCACAAGCCTTTTTGCTTTCATAATGGGATGAAT 1028 | ||||||||| || || || ||| || || ||| | ||||||| ||| | |||||||| Sbjct 872 TCCTATCAGTTGAA-TTAGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAAT 930 Query 1029 TTCTTGGTCGACCCGGAGAACAAAGTTTT--TGTGT-GTCCCGGTAAAAATGGGTTCTCC 1085 ||||||||||||| | ||||||||||||| ||| | || ||||| || || ||||| Sbjct 931 TTCTTGGTCGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCC 990 Query 1086 AA-GACCTTCTTAAACATTTTGGGAGAAAATAAATCCATACAAGTGGAACACCAAGATGC 1144 || | ||||| || || ||||||| |||||| ||||||||||| || || ||| | Sbjct 991 AATG-TTTTCTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTC 1049 Query 1145 AGAATCT-GTATGCTCACTTCTCGTCAATTATGTTCCAACTTTGGTTCAAATC 1196 || ||| | |||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1050 AGTGTCTAG-ATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATC 1101 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61997673075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5