BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930712

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21170.1 | Symbols:  | F-box and associated interaction doma...   143    1e-33


> AT3G21170.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:7419976-7421160 FORWARD LENGTH=1185
Length=1185

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 287/381 (75%), Gaps = 43/381 (11%)
 Strand=Plus/Plus

Query  35   GAGGAATTAGTAGTGCAGATACTCACTAGGGCTT-CAGCAGCT-TCTCTAGCACGATCAC  92
            ||||| || |||||| |||||||| |||| | || | || | | | ||||||||||| ||
Sbjct  22   GAGGATTTGGTAGTGGAGATACTCTCTAGAG-TTCCGGCTG-TATTTCTAGCACGATTAC  79

Query  93   AATGTGTATCCAAAAGATGGAATGCTCTGATCAAAGATGAGAAA-TTTGCGAAGAA--AC  149
             ||    ||||||| |||||||  || |||||||||||| |||| ||| | |||||  ||
Sbjct  80   GATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTT-CTAAGAAGCAC  138

Query  150  GGTT-T-TTGCAGC--GGTCCCATGCTACT-G-TAATCATGTTGATTGAAAAT-AGGGTT  202
              || |  |||  |  || | | | ||| | | |  || ||||||||||  || ||| ||
Sbjct  139  TCTTCTAATGCTCCAAGG-CAC-T-CTA-TGGCT-CTCGTGTTGATTGATCATAAGGTTT  193

Query  203  AATCTAGTGAGCGT-CAATCTCCATGAAATTCACAACA--ATATGGT--A-AAGGTAAC-  255
            | || ||||||  | |||||||| || ||||||||| |   | || |  | | | |||| 
Sbjct  194  ATTC-AGTGAG-ATCCAATCTCCGTGGAATTCACAATAGCGT-TGCTCCATATGTTAACA  250

Query  256  -AA-A--TCAGTTTAGCCTAAAAGAACCTCTTTCT-A-AA-TCTTCAGA-AGAAGTTGAT  307
             || |  ||| |||||||||||||||| ||||||| | || | |||| | |||||| |||
Sbjct  251  TAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTCA-ACAGAAGTCGAT  309

Query  308  ATATGTGATATCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAAGATGATATATAG  367
            ||| |  |  ||||||||||||||||||||||||||||||||||||| |  ||  |||||
Sbjct  310  ATAGGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAA-G--GAC-TATAG  365

Query  368  ACTGGTTGTTTGGAATCCGCT  388
            |||||| ||||||||||||||
Sbjct  366  ACTGGTGGTTTGGAATCCGCT  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5