BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930713

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21130.1 | Symbols:  | F-box and associated interaction doma...  87.9    1e-16


> AT3G21130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104

 Score = 87.9 bits (47),  Expect = 1e-16
 Identities = 214/291 (74%), Gaps = 26/291 (9%)
 Strand=Plus/Plus

Query  56   TGAGTTCGAAATCTATGACTTTACCTCTAATTCTTGGAGGGTTGCTTTTCAGACTAGAGA  115
            ||||| | || ||||||||||||||||||| || |||   |||| |  |  | || ||| 
Sbjct  534  TGAGTACCAAGTCTATGACTTTACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGGAGG  593

Query  116  CTGGTTCATA-CAA-CCGT-GGA---AGAGCCGTGTCATGTCTGTGAATGGAAATACTTA  169
            || ||||||| |||    | |||    ||| |||| | |||||||||| |||||||||||
Sbjct  594  CTTGTTCATACCAAGTATTGGGACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTA  653

Query  170  CTGGCTTGCTAGTACT-AA-A--GA---CCA-TGGGGAT-TACTTACAAAGTTATGATTT  220
            ||||||||||  |||| || |  ||   ||| | |  || | ||||  | ||| ||||||
Sbjct  654  CTGGCTTGCTCTTACTGAAGACGGACCGCCATTTGATATGTTCTTATTATGTTTTGATTT  713

Query  221  TTCGACAGA-GAAATTTAGAAGGGTGTCTCTTCCG--GG-TGA-TGATCGTTCTTATCA-  274
            |||||| || |  |||| || |  |||||||||||  || | | |  | || ||||| | 
Sbjct  714  TTCGACTGACG-GATTTCGACGTCTGTCTCTTCCGACGGAT-ACTCCTTGTACTTATTAT  771

Query  275  GGT-TTTCAGCTTATCAGTGACTAGAGAAGAGCAACAACTTTGTTTGCTTA  324
            | | | ||   ||||||||||||||||||||||||||||||||| || |||
Sbjct  772  GATGTGTC--TTTATCAGTGACTAGAGAAGAGCAACAACTTTGTATGTTTA  820



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34209454107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5