BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930715

Length=1157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21170.1 | Symbols:  | F-box and associated interaction doma...  97.1    3e-19


> AT3G21170.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:7419976-7421160 FORWARD LENGTH=1185
Length=1185

 Score = 97.1 bits (52),  Expect = 3e-19
 Identities = 102/125 (82%), Gaps = 8/125 (6%)
 Strand=Plus/Plus

Query  64   CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGGGTTCCGT-TG-ACTTCTTTGGCAA  121
            ||||||||||||||||||||||||||||||||||| ||||||  || | ||||  | || 
Sbjct  16   CTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTATTTCTA-G-CAC  73

Query  122  GATTACGATGGGCATACAAAGGATGGAACGA-TCTGATCAAAGATAAGATACTTGC-AAT  179
            |||||||||   ||| |||| |||||||| | | |||||||||||  || |||| | || 
Sbjct  74   GATTACGATCAACATCCAAACGATGGAAC-ACTTTGATCAAAGATGGGAAACTTTCTAA-  131

Query  180  GAAGC  184
            |||||
Sbjct  132  GAAGC  136



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56776816395


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5