BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930737
Length=2368
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04160.1 | Symbols: AIR3 | Subtilisin-like serine endopeptid... 3609 0.0
> AT2G04160.1 | Symbols: AIR3 | Subtilisin-like serine endopeptidase
family protein | chr2:1401268-1407745 REVERSE LENGTH=2552
Length=2552
Score = 3609 bits (1954), Expect = 0.0
Identities = 2237/2374 (94%), Gaps = 17/2374 (1%)
Strand=Plus/Plus
Query 3 aagaagaaga-agaag-agaagaagaaTGAAGCTTACACATACCTTCTCGTTTCTTTTCT 60
|||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 26 AAGAAGAAGAGAGAAGAAGAAGAAGAATGAAGCTAACACATAACTTCTCGTTTC--TTC- 82
Query 61 TTCTTCTCCTTCTTGTCCACACGAGCTCGAAACCCACTCTTGCTTCTAAAGATTCGTCTT 120
||||||| |||||||| |||| ||||||||||| || |||||||||||||||||||||||
Sbjct 83 TTCTTCTTCTTCTTGTTCACATGAGCTCGAAACACATTCTTGCTTCTAAAGATTCGTCTT 142
Query 121 CATATGTGGTGTACTTTGGAGCTCACTCTCATGTCGGAGAGATAACTGAAGAAGCCATGG 180
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 143 CATATGTGGTGTACTTCGGAGCTCACTCTCATGTCGGAGAGATAACAGAAGATGCCATGG 202
Query 181 ATCGCGTCAAAGAAACCCACTACGACTTTCTTGGTAT-CTTCATTGGAAGCCGTGAGATT 239
|||| ||||||||||| |||||||||||||||||| | ||||| ||||||||||||||
Sbjct 203 ATCGAGTCAAAGAAACTCACTACGACTTTCTTGGT-TCCTTCACTGGAAGCCGTGAGAGA 261
Query 240 GCCACAGACGCCATTTTCTACTCATACACAAAGCACATCAACGGATTCGCTGCTCATCTG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GCCACAGACGCCATTTTCTACTCATACACAAAGCACATCAACGGATTCGCTGCTCATCTA 321
Query 300 GACCACGACCTCGCATATGCAATCTCCAAACACCCTGAAGTTGTGTCTGTATTCCCAAAC 359
||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 322 GACCACGACCTTGCTTATGAAATCTCCAAACACCCTGAAGTTGTGTCTGTCTTCCCAAAC 381
Query 360 AAAGCCTTGAAGCTTCACACGACTCGATCATGGGACTTCTTGGGTTTGGAACATAACTCT 419
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 AAAGCTTTAAAGCTTCACACGACTCGATCATGGGACTTTTTGGGTTTGGAACATAACTCT 441
Query 420 TACGTTCCTTCCTCTTCCATTTGGAGAAAGGCTAGATTCGGAGAAGATACCATTATCGCA 479
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 442 TACGTTCCTTCCTCTTCCATTTGGAGAAAGGCTAGGTTCGGAGAAGATACCATTATTGCA 501
Query 480 AATCTCGATACGGGTGTGTGGCCAGAATCAAAGAGCTTTAGAGATGAAGGCTTGGGACCA 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AATCTCGATACAGGTGTGTGGCCAGAATCAAAGAGCTTTAGAGATGAAGGCTTGGGACCA 561
Query 540 ATTCCTTCAAGATGGAAGGGAATATGTCAAAACCAAAAAGATGCCACTTTCCATTGCAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 ATTCCTTCAAGATGGAAGGGAATATGTCAAAACCAAAAAGATGCCACTTTCCATTGCAAT 621
Query 600 AGGAAACTGATCGGAGCAAGGTACTTTC-ACAAGGGCTACGCAGCCGCCGTAGGACCTCT 658
||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct 622 AGGAAACTGATAGGAGCAAGGTAC-TTCAACAAGGGCTACGCAGCCGCCGTAGGACATCT 680
Query 659 AAACTCAACCTTCGAGTCTCCACGTGATCTCGACGGCCATGGCTCCCACACTCTCTCCAC 718
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CAACTCAAGCTTCGACTCTCCACGTGATCTCGACGGCCATGGCTCCCACACTCTCTCCAC 740
Query 719 CGCCGCCGGAGATTTCGTCCCTGGAGTTAGCATCTTCGGCCAAGGCAACGGCACGGCAAA 778
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 741 CGCCGCCGGAGATTTTGTTCCTGGAGTCAGCATCTTCGGCCAAGGCAACGGCACGGCCAA 800
Query 779 AGGTGGCTCTCCTCGGGCCAGAGTAGCCGCATACAAAGTCTGTTGGCCACCAGTCAAAGG 838
||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct 801 AGGTGGCTCCCCTCGCGCCAGAGTGGCCGCGTACAAAGTCTGCTGGCCGCCAGTCAAAGG 860
Query 839 CAATGAGTGCTACGACGCCGACGTCCTCGCCGCTTTTGATGCTGCCATACACGACGGAGC 898
||| || ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct 861 CAACGAATGCTACGACGCAGACGTCCTCGCTGCTTTCGACGCTGCCATACACGACGGAGC 920
Query 899 TGACGTCATATCTGTCTCTCTAGGCGGCGAGCCTACCTCGTTTTTTAACGATAGTGTCGC 958
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 921 TGACGTCATATCCGTCTCTCTAGGCGGCGAGCCTACCTCGTTTTTTAACGACAGTGTCGC 980
Query 959 TATTGGTTCGTTTCACGCCGCTAAGAAGCGGATCGTGGTTGTTTGCTCCGCCGGAAACTC 1018
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 981 TATTGGTTCCTTTCACGCCGCTAAGAAGCGGATCGTGGTTGTTTGCTCTGCCGGAAACTC 1040
Query 1019 TGGACCGGCGGATAGTACGGTTTCCAACGTCGCGCCGTGGCTGATCACCGTCGGAGCTAG 1078
||||||||| |||||||||||||| || |||||||| |||| ||| ||||| || |||||
Sbjct 1041 TGGACCGGCAGATAGTACGGTTTCTAATGTCGCGCCATGGCAGATTACCGTTGGTGCTAG 1100
Query 1079 CACTATGGACCGTGAGTTTGCTAGCAACCTTGTTCTCGGTAATGGAAAACATTACAAGGG 1138
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1101 CACCATGGACCGTGAGTTTGCTAGCAATCTTGTTCTCGGTAATGGAAAACATTACAAGGG 1160
Query 1139 ACAAAGCTTGTCATCCACAGCATTGCCACATGCTAAGTTCTATCCAATTATGGCATCTGT 1198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 ACAAAGCTTGTCATCCACGGCATTGCCACATGCTAAGTTCTATCCAATTATGGCATCTGT 1220
Query 1199 AAATGCAAAAGCTAAGAACGCTTCAGCTTTGGATGCACAATTGTGCAAACTTGGATCGCT 1258
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1221 AAATGCAAAAGCTAAGAACGCTTCAGCTTTGGATGCACAATTATGCAAACTTGGATCGCT 1280
Query 1259 TGACCCTATAAAGGCAAAGGGGAAGATATTAGTGTGTCTCAGAGGACAGAACCCGAGGGT 1318
||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct 1281 TGACCCTATAAAGACAAAGGGAAAGATATTAGTGTGTCTCAGAGGGCAGAACGGGAGGGT 1340
Query 1319 GGAAAAGGGTCGGGTGGTGGCTTTAGCTGGTGGCGTAGGGATGGTTCTTGAGAACAC-TA 1377
|||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 1341 GGAAAAGGGTCGGGCCGTGGCTTTAGGGGGTGGCATAGGGATGGTTCTTGAGAACACTTA 1400
Query 1378 TTGTCACCGGGAATGATCTAAC-CGCTGATCCGCATGTCCTCCCAGCTACACAGCTCACT 1436
|||||||||||||||| | || |||||| ||||||||||| ||||| ||||||||||||
Sbjct 1401 -TGTCACCGGGAATGAT-TTACTCGCTGACCCGCATGTCCTTCCAGCCACACAGCTCACT 1458
Query 1437 TCTAAGGATGGTTTTGCTGTGTCAAGATATATCAGCCAAACCAAGAAGCCGATTGCGCAC 1496
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1459 TCTAAGGATAGTTTTGCTGTGTCAAGATATATCAGCCAAACCAAGAAGCCGATTGCACAC 1518
Query 1497 ATTACTCCTTCTAGGACAGATTTAGGATTAAAACCAGCGCCTGTAATGGCTTCATTTTCT 1556
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1519 ATTACTCCTTCAAGGACAGATTTGGGACTAAAACCAGCGCCTGTAATGGCTTCATTTTCT 1578
Query 1557 TCTAAGGGTCCAAGCACAGTGGCTCCTCAGATTCTGAAGCCTGACATAACTGCTCCTGGT 1616
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 TCAAAAGGTCCAAGCATAGTGGCTCCTCAGATTCTGAAGCCTGACATAACTGCTCCTGGT 1638
Query 1617 GTGAGTGTGATCGCTGCCTACACTGCCGCAGTATCTCCAACAGAAC-AACAGTTTGATCC 1675
||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||
Sbjct 1639 GTGAGTGTGATCGCTGCCTACACTGGAGCAGTCTCTCCAACA-AACGAACAGTTTGATCC 1697
Query 1676 TCGACGACTTCTGTTCAATGCTATTTCAGGAACCTCCATGTCTTGTCCTCATATCTCGGG 1735
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1698 TCGACGACTTCTGTTCAATGCTATTTCAGGAACCTCTATGTCTTGTCCTCATATCTCTGG 1757
Query 1736 CGTTGCGGGTCTTCTCAAAACCCGTTATCCTTCCTGGAGCCCCGCAGCTATCCGCTCTGC 1795
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1758 CATTGCGGGTCTTCTCAAAACTCGTTATCCTTCTTGGAGCCCCGCAGCTATCCGCTCTGC 1817
Query 1796 CATCATGACTACCGCAACAACAATGGATGACATTCCTGGACCTATTCAAAATGCAACCAG 1855
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1818 CATCATGACTACCGCAACAATAATGGATGACATTCCTGGACCTATCCAAAATGCAACCAA 1877
Query 1856 CATGAAGGCAACGCCTTTCAGTTTCGGGGCAGGACACGTCCAACCAAATCTAGCTGTGAA 1915
|||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1878 CATGAAGGCAACACCTTTCAGTTTTGGGGCAGGACACGTCCAACCAAATTTAGCTGTGAA 1937
Query 1916 TCCCGGTCTCATATACGATTTAGGCGTCAAGGATTACCTCAACTTCTTATGCTCACTTAG 1975
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1938 TCCCGGTCTCGTATACGATTTAGGCATCAAGGATTACCTCAACTTCTTATGCTCACTTGG 1997
Query 1976 ATACAATGCATCACAAATCTCTGTCTTCTCGGGAAATAACTTTACTTGTTCAAGCCCCAA 2035
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct 1998 ATACAATGCATCACAAATCTCTGTATTCTCGGGCAACAACTTTACTTGTTCAAGCCCTAA 2057
Query 2036 AACCAGTCTTGTTAACCTCAACTATCCTTCCATCACAGTTCCAAACTTAACATCAAGCAA 2095
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 AATCAGTCTTGTTAACCTCAACTATCCTTCCATCACAGTTCCAAACTTAACATCAAGCAA 2117
Query 2096 AGTCACCGTCTCAAGGACCGTTAAAAACGTTGGACGACCTTCGACT-TATACTGTCCGGG 2154
||||||||| |||||||| ||||||||||||||||||||||||| | ||||| ||| ||
Sbjct 2118 AGTCACCGTTTCAAGGACTGTTAAAAACGTTGGACGACCTTCGA-TGTATACCGTCAAGG 2176
Query 2155 TGGCTAACCCACAAGGTGTTTATGTCGCGGTTAAGCCAACGAGCTTGAATTTTACCAAAG 2214
|| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2177 TGAATAACCCACAGGGTGTTTATGTCGCGGTGAAGCCAACGAGCTTGAATTTCACCAAAG 2236
Query 2215 TTGGAGAGCAAAAGACGTTTAAAGTGATCCTTGTGAAAAGTAAGGGAAATGTGGCTAAGG 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 TTGGAGAGCAAAAGACGTTTAAAGTGATCCTTGTGAAAAGTAAGGGAAATGTGGCTAAGG 2296
Query 2275 GCTATGTGTTTGGAGAATTGGTTTGGTCAGACAAGAAGCATCGTGTGAGAAGTCCCATTG 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 GCTATGTGTTTGGAGAATTGGTTTGGTCAGACAAGAAGCATCGTGTGAGAAGTCCCATTG 2356
Query 2335 TGGTGAAGCTCTAAATTTGATTTTTAGTGCCAAT 2368
|||||||||||||| ||||| ||| |||||||||
Sbjct 2357 TGGTGAAGCTCTAACTTTGAATTTGAGTGCCAAT 2390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117569676390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5