BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930748 Length=1747 Score E Sequences producing significant alignments: (Bits) Value AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2643 0.0 AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1417 0.0 > AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:1480068-1482089 REVERSE LENGTH=2022 Length=2022 Score = 2643 bits (1431), Expect = 0.0 Identities = 1640/1740 (94%), Gaps = 17/1740 (1%) Strand=Plus/Plus Query 18 AGAAAATGTTTGGCCGATCTGCGATTCGT---GGAGGTTTCCGTCCTGAGAATCTAGGGC 74 ||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||| | Sbjct 102 AGAAAATGTTTGGCCGATCTGCGATTCGTGGAGGAGGATTCCGTGCAGAGAATCTAGGTC 161 Query 75 AAAACGCACTTACCTTAATAGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAA 134 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 162 AAAACGCACTTACCTTAATCGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAA 221 Query 135 TCTTCACCATTATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACA 194 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 TCTTCACCATAATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACA 281 Query 195 AAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTGAGATCCGATGACTCCGTTG 254 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 282 AAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTTAGATCCGATGACTCCGTTG 341 Query 255 TTAAAACCGGTGAAGATTTCATGGTAGCGAATCAAACCGCATTTGCGGAGTTTATCAACA 314 ||||||||||||||||||||||| | || || |||||||||||||| ||||||||||||| Sbjct 342 TTAAAACCGGTGAAGATTTCATGCTCGCTAACCAAACCGCATTTGCAGAGTTTATCAACA 401 Query 315 T-AACTGATGTTGAAGCAACCAATACCAATGAGACTACTTCAGAGGGAGAGGCTAATC-A 372 | ||| |||||||||| ||| ||||||||||||||| |||||| ||||| ||| | | Sbjct 402 TAAAC-GATGTTGAAG---CCAGCACCAATGAGACTACTACAGAGGAAGAGGGTAA-CAA 456 Query 373 GTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATCAAG-AAGTGTTTCATCTTA 431 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 457 GTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATC-AGCAAGTGTTTCATCTTA 515 Query 432 TGATGAGAGCTACTATTGAGAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTG 491 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 516 TGATGAGAGCTACTATTGACAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTG 575 Query 492 -TGGTTG-G-TGAAGGTGTGAATTCTTGTGATATGGCGTGGCGGTATAGGCCTAAAGATG 548 | | | | |||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 576 TTACTGGCGAAGAAGGTGTGAATTCTTGTGATATGGCGTGGCGTTATAGGCCTAGAGATG 635 Query 549 GGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGGTAAGTCTGAGAATT 608 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 636 GGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGCTAAGTCTGAGAATT 695 Query 609 GTAGTGTGAGTGTTGTGGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGA 668 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 696 GTAGTGTGAGTGTTGTTGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGA 755 Query 669 AGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGAGAAGAAAGATGATTTCTCTTTGC 728 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 756 AGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGGGAAGAAAGATGATTTCTCTTTGC 815 Query 729 CTGTTGTTGGTGAACTAGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTA 788 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 CTGTTGTTGGTGAACTTGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTA 875 Query 789 AGAGTGGCAAGTATTTGGTTTATGTTGGTGGAGGAGATAGGTGTAAGAGTATGAATCATT 848 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 876 AGACTGGCAAGTATTTGGTTTATGTTGGTGGTGGAGATAGGTGTAAGAGTATGAATCATT 935 Query 849 TTCTGTGGAGTTTTTTGTGTGCACTTGGGGAAGCTCAGTATTTGAATAGGACTTTGGTGA 908 ||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||| Sbjct 936 TTCTGTGGAGTTTCTTGTGTGCTCTTGGGGAAGCTCAGTATTTGAATAGGACTCTAGTGA 995 Query 909 TGGATTTGACGTTGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGA 968 |||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| | Sbjct 996 TGGATTTGACCTTGTGTTTGTCTTCTATCTATACTTCGTCTGGTCAGAATGAGGAAGGCA 1055 Query 969 AGGACTTTC-GGTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGAT 1027 |||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1056 AGGA-TTTCAGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGAT 1114 Query 1028 GAAGTTCAGTTTTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAAT 1087 |||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1115 GAAGCTCAGTTTTGGGCTCAGTGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAAC 1174 Query 1088 ATTCATCTCGTGGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACG 1147 |||||||||||||||||||||||||||| || |||||||| |||| ||| ||||||||| Sbjct 1175 CTTCATCTCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACG 1234 Query 1148 TTGATAATGAGGAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAA 1207 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 1235 TTGATAATGAGGAAGTTTGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAA 1294 Query 1208 GGAGATGCAGAATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATCAAGAAGGTTG 1267 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1295 GGAGATGCAGAATCTGTTGTTAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTG 1354 Query 1268 ATGGAAATTGTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGCAGTACACATT 1327 |||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1355 ATGGAAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATT 1414 Query 1328 GAGAGAGGAGATAAAGCAAGAAACAAGGAGCTGTGGCCTAATCTTGAAACGGATACTTCC 1387 ||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||||| Sbjct 1415 GAGAGAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCC 1474 Query 1388 CCGAGCGCTCTTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATC 1447 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1475 CCGAGCGCTCTCTTGTCGACCTTGCAGGACAAAGTTGAAGAAGGAAGGCATCTCTACATC 1534 Query 1448 GCAACAAATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGTATGCCACTCAT 1507 ||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1535 GCAACAAATGAAGGAGAATTATCCTTCTTCAACCCTTTGAAAGATAAGTACGCCACTCAT 1594 Query 1508 TTTCTTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACA 1567 || |||||||||||||||||||| ||||| |||| || |||||||||||||||||||| Sbjct 1595 TTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTACT 1654 Query 1568 AAGCTTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACA 1627 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1655 AAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACACA 1714 Query 1628 GAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGC 1687 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1715 GAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGT 1774 Query 1688 AAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCTTGATCTCTCTTAGATTCCTCATTT 1747 ||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| Sbjct 1775 AAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCCTGATCTCTGTCATATTCCTCATTT 1834 > AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04280.1); Has 136 Blast hits to 136 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:7482466-7484405 REVERSE LENGTH=1940 Length=1940 Score = 1417 bits (767), Expect = 0.0 Identities = 1404/1699 (83%), Gaps = 94/1699 (6%) Strand=Plus/Plus Query 47 GGAGGTTTCCGTCCTGAGAATCTAGGGCAAAACGCACTTA-CCTTAATAGGTAA-CATAG 104 ||||||||||| |||||||||||||||||||||||| || ||||||| || || ||||| Sbjct 108 GGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCA-GTATCCTTAATCGG-AAGCATAG 165 Query 105 GCTTCTCACT-CTTCGTCTTCGGAGTAC-TAATCTTCACCATTATCGCCGCAACTTACGA 162 ||||||| | | |||| ||||||| | || | |||||||||||||| || || || || Sbjct 166 GCTTCTCTGTAC-TCGTAATCGGAGT-CGTAGTTTTCACCATTATCGCTGCTACATATGA 223 Query 163 ACCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-T 221 |||||||||||| || || |||||||||||||||||||||||||||||||| |||| | | Sbjct 224 ACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCCA-ATT 282 Query 222 CAAACGCTACACTGAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCATGGTAG 281 |||||||||| || | |||||| ||| |||| |||||||||||||||||||||| | Sbjct 283 CAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATGGCGG 342 Query 282 CGAATCAAACCGCATTT-GCGGAGTTTATCAACATAACTGATGTTGAAGCAACCAATACC 340 |||| |||||||| ||| ||||| || ||||| ||| ||||||||| | || | || | Sbjct 343 CGAACCAAACCGCGTTTGGCGGA-TTCATCAATATAGCTGATGTTG-A--AA-C-AT--C 394 Query 341 AATGAGACT-ACTTCAGAGGGAGAGGCTAATCAGTTGGAATGTGATGTGAATACT-CCAA 398 ||||| | || || || || |||||| ||||| |||||| |||| | |||| Sbjct 395 --TGAGAATGAC-TC----TGA-TGG-TAATCAATTGGATTGTGATACCAATA-TCCCAA 444 Query 399 TTGATTGCAAAGATCAAGAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGAGAAGTTT 457 ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||| ||||||||| Sbjct 445 TTGATTGCAAAGATCCTGAAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 503 Query 458 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTGGTTGGT-GAAGGT-GT-G-AATTC 513 ||||| | ||||||||||||||||||||| |||||| || || |||||| || | | ||| Sbjct 504 AAAGACAGTCACTTTTATAAGTTTGGTAAACCTGTGATT-GTGGAAGGTAGTAGTAGTTC 562 Query 514 TTGTGATATGGCGTGGCGGTATAGGCCTAAAGATGG-GAAGAGTGCTGCTTTTTATAAGG 572 |||||||||||| ||||| ||||| ||||| ||||| ||| | ||||| |||||||||| Sbjct 563 TTGTGATATGGCTTGGCGTTATAGACCTAAGGATGGTAAAGCG-GCTGCGTTTTATAAGG 621 Query 573 ATTATAGGAGGTTTGTTG-TTGGTAAGTCTGAGAATTGTAGTGTGAGTGTTG-TGGGGAT 630 ||||||||||||||| || ||| ||||||| |||||||||||| |||| || ||||||| Sbjct 622 ATTATAGGAGGTTTG-TGATTGAAAAGTCTGGGAATTGTAGTGTTAGTG-TGATGGGGAT 679 Query 631 TGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGAAGAAGAATCAGAAAGCTGGGTT 690 ||||||||||||||||||| |||||||||||||||||||| || | | ||||| Sbjct 680 TGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGTT 730 Query 691 TGAGAAA----ACTGGTGAG-AAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 744 | |||| | ||||| | ||| ||||||||| | |||||||| ||||||||| | Sbjct 731 T-CGAAATTCGAGTGGTG-GTAAGGTTGATGATTTCGCATTGCCTGTAGTTGGTGAAGC- 787 Query 745 AGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAG-AGTGGCAAGTAT 802 |||||||||||| |||||| | ||||||||||| | ||||||| ||| || | | | || Sbjct 788 AGTGAATGATTCACTTCCTGTTGTTGAGTCTGAAAATGTGTTTAAAGAAG-GTC-ATTAC 845 Query 803 TTGGTTTATGT-TGGTGGAGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 860 ||||||||| | |||||||||||||||||||||||||||||| || |||| ||||||||| Sbjct 846 TTGGTTTAT-TCTGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 903 Query 861 TTTTGTGTGCACTT-GGGGAAGCTCAGTATTTGAATAGGACTTTGGTGATGGATTTGACG 919 | |||||||| || ||||||||||||||||||||||| || || |||||||||||||| Sbjct 904 TCTTGTGTGC-TTTAGGGGAAGCTCAGTATTTGAATAGAACATTAGTGATGGATTTGAC- 961 Query 920 T-TGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGAAGGACTTTCG 978 | | |||||||||||| | || || | ||||||||| ||||||||||||||||||||| | Sbjct 962 TCTTTGTTTGTCTTCTGTTTATACATTGTCTGGTCAAAACGAGGAAGGGAAGGACTTTAG 1021 Query 979 GTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGATGAAGTTCAGTT 1038 ||||||||||||||||||||||||||| || ||||||||| |||| || | || ||||| Sbjct 1022 GTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTATGTTAGACCAGGTGCAGTT 1081 Query 1039 TTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAATATTCATCTCGT 1098 ||||||| | ||||||||| || | | | ||||| ||| |||| || ||||||| || Sbjct 1082 TTGGGCTGATTGGGGGAAA-TG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATCTTGT 1135 Query 1099 GGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACGTTGATAATGAG 1158 ||| |||||| ||||||| ||||||||||||| ||||| || || |||||||||||||| Sbjct 1136 GGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAAGGACACGTTGATAATGAG 1195 Query 1159 GAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAAGGAGATG-CAG 1217 |||||| ||| | ||||||||||| || |||||||| ||||| || ||||| || | ||| Sbjct 1196 GAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGTATGCGAAGGGGA-GACAG 1254 Query 1218 AATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATC-AAGAAGGTTGATGGAAATT 1276 |||||||||| ||||||| ||| |||| || |||||||| || | | ||||||| ||| Sbjct 1255 AATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA-ACGACTGATGGAGATT 1313 Query 1277 GTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGC-AGTACACATTGAGAGAGG 1335 || ||||||||||| || ||||||||||||||||| ||||| | | |||||||||||||| Sbjct 1314 GTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTA-TTCACATTGAGAGAGG 1372 Query 1336 AGATAAAGCAAGAAACAAGG-AGCTGTGGCCTAATCTTGAAACGGATACTTCCCCGAGCG 1394 ||| || || |||||||||| || | |||||||||||||||| ||||||||| || ||| Sbjct 1373 AGACAAGGCGAGAAACAAGGAAG-TTTGGCCTAATCTTGAAAAGGATACTTCACCAAGCT 1431 Query 1395 CTC-TTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATCGCAACA 1453 | | |||| || ||| | ||||||||| | ||| |||||||| |||| || || |||||| Sbjct 1432 C-CATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCTTTATATTGCAACA 1490 Query 1454 AATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGT--ATGCCACTCATTTTC 1511 |||||| ||||||||| ||||| ||||| ||||||||||||| | || | ||||||| Sbjct 1491 AATGAACCAGAGTTATCTTTCTTTAACCCCTTGAAAGACAAGTACAAACC-C-CATTTTC 1548 Query 1512 TTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACAAAGC 1571 | | || | || ||||| |||||||||| ||||| |||||||||||||| || |||| Sbjct 1549 TGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACAACGAAGC 1608 Query 1572 TTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACAGAAG 1631 |||||||||| ||||| || |||||||| |||||||||||||| |||||||| ||||| | Sbjct 1609 TTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCTGTTGATACAGAGG 1668 Query 1632 TATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGCAAAG 1691 | ||||||||||||||||||||||||||||||||||| |||||||| || || || | || Sbjct 1669 TGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACTGTAGAG 1728 Query 1692 ATGGAGTTGGGACCTGCAA 1710 ||||| | || || ||||| Sbjct 1729 ATGGAATCGGCACTTGCAA 1747 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86395137945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5