BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930748
Length=1747
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2643 0.0
AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1417 0.0
> AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes
- 6 (source: NCBI BLink). | chr2:1480068-1482089 REVERSE LENGTH=2022
Length=2022
Score = 2643 bits (1431), Expect = 0.0
Identities = 1640/1740 (94%), Gaps = 17/1740 (1%)
Strand=Plus/Plus
Query 18 AGAAAATGTTTGGCCGATCTGCGATTCGT---GGAGGTTTCCGTCCTGAGAATCTAGGGC 74
||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||| |
Sbjct 102 AGAAAATGTTTGGCCGATCTGCGATTCGTGGAGGAGGATTCCGTGCAGAGAATCTAGGTC 161
Query 75 AAAACGCACTTACCTTAATAGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAA 134
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 162 AAAACGCACTTACCTTAATCGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAA 221
Query 135 TCTTCACCATTATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACA 194
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCTTCACCATAATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACA 281
Query 195 AAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTGAGATCCGATGACTCCGTTG 254
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 282 AAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTTAGATCCGATGACTCCGTTG 341
Query 255 TTAAAACCGGTGAAGATTTCATGGTAGCGAATCAAACCGCATTTGCGGAGTTTATCAACA 314
||||||||||||||||||||||| | || || |||||||||||||| |||||||||||||
Sbjct 342 TTAAAACCGGTGAAGATTTCATGCTCGCTAACCAAACCGCATTTGCAGAGTTTATCAACA 401
Query 315 T-AACTGATGTTGAAGCAACCAATACCAATGAGACTACTTCAGAGGGAGAGGCTAATC-A 372
| ||| |||||||||| ||| ||||||||||||||| |||||| ||||| ||| | |
Sbjct 402 TAAAC-GATGTTGAAG---CCAGCACCAATGAGACTACTACAGAGGAAGAGGGTAA-CAA 456
Query 373 GTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATCAAG-AAGTGTTTCATCTTA 431
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 457 GTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATC-AGCAAGTGTTTCATCTTA 515
Query 432 TGATGAGAGCTACTATTGAGAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTG 491
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TGATGAGAGCTACTATTGACAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTG 575
Query 492 -TGGTTG-G-TGAAGGTGTGAATTCTTGTGATATGGCGTGGCGGTATAGGCCTAAAGATG 548
| | | | |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 576 TTACTGGCGAAGAAGGTGTGAATTCTTGTGATATGGCGTGGCGTTATAGGCCTAGAGATG 635
Query 549 GGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGGTAAGTCTGAGAATT 608
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 636 GGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGCTAAGTCTGAGAATT 695
Query 609 GTAGTGTGAGTGTTGTGGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGA 668
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 696 GTAGTGTGAGTGTTGTTGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGA 755
Query 669 AGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGAGAAGAAAGATGATTTCTCTTTGC 728
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 756 AGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGGGAAGAAAGATGATTTCTCTTTGC 815
Query 729 CTGTTGTTGGTGAACTAGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTA 788
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CTGTTGTTGGTGAACTTGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTA 875
Query 789 AGAGTGGCAAGTATTTGGTTTATGTTGGTGGAGGAGATAGGTGTAAGAGTATGAATCATT 848
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 876 AGACTGGCAAGTATTTGGTTTATGTTGGTGGTGGAGATAGGTGTAAGAGTATGAATCATT 935
Query 849 TTCTGTGGAGTTTTTTGTGTGCACTTGGGGAAGCTCAGTATTTGAATAGGACTTTGGTGA 908
||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 936 TTCTGTGGAGTTTCTTGTGTGCTCTTGGGGAAGCTCAGTATTTGAATAGGACTCTAGTGA 995
Query 909 TGGATTTGACGTTGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGA 968
|||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |
Sbjct 996 TGGATTTGACCTTGTGTTTGTCTTCTATCTATACTTCGTCTGGTCAGAATGAGGAAGGCA 1055
Query 969 AGGACTTTC-GGTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGAT 1027
|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1056 AGGA-TTTCAGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGAT 1114
Query 1028 GAAGTTCAGTTTTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAAT 1087
|||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1115 GAAGCTCAGTTTTGGGCTCAGTGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAAC 1174
Query 1088 ATTCATCTCGTGGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACG 1147
|||||||||||||||||||||||||||| || |||||||| |||| ||| |||||||||
Sbjct 1175 CTTCATCTCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACG 1234
Query 1148 TTGATAATGAGGAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAA 1207
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1235 TTGATAATGAGGAAGTTTGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAA 1294
Query 1208 GGAGATGCAGAATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATCAAGAAGGTTG 1267
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1295 GGAGATGCAGAATCTGTTGTTAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTG 1354
Query 1268 ATGGAAATTGTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGCAGTACACATT 1327
|||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1355 ATGGAAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATT 1414
Query 1328 GAGAGAGGAGATAAAGCAAGAAACAAGGAGCTGTGGCCTAATCTTGAAACGGATACTTCC 1387
||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 1415 GAGAGAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCC 1474
Query 1388 CCGAGCGCTCTTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATC 1447
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1475 CCGAGCGCTCTCTTGTCGACCTTGCAGGACAAAGTTGAAGAAGGAAGGCATCTCTACATC 1534
Query 1448 GCAACAAATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGTATGCCACTCAT 1507
||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1535 GCAACAAATGAAGGAGAATTATCCTTCTTCAACCCTTTGAAAGATAAGTACGCCACTCAT 1594
Query 1508 TTTCTTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACA 1567
|| |||||||||||||||||||| ||||| |||| || ||||||||||||||||||||
Sbjct 1595 TTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTACT 1654
Query 1568 AAGCTTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACA 1627
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1655 AAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACACA 1714
Query 1628 GAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGC 1687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 GAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGT 1774
Query 1688 AAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCTTGATCTCTCTTAGATTCCTCATTT 1747
||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||
Sbjct 1775 AAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCCTGATCTCTGTCATATTCCTCATTT 1834
> AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G04280.1);
Has 136 Blast hits to 136 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:7482466-7484405
REVERSE LENGTH=1940
Length=1940
Score = 1417 bits (767), Expect = 0.0
Identities = 1404/1699 (83%), Gaps = 94/1699 (6%)
Strand=Plus/Plus
Query 47 GGAGGTTTCCGTCCTGAGAATCTAGGGCAAAACGCACTTA-CCTTAATAGGTAA-CATAG 104
||||||||||| |||||||||||||||||||||||| || ||||||| || || |||||
Sbjct 108 GGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCA-GTATCCTTAATCGG-AAGCATAG 165
Query 105 GCTTCTCACT-CTTCGTCTTCGGAGTAC-TAATCTTCACCATTATCGCCGCAACTTACGA 162
||||||| | | |||| ||||||| | || | |||||||||||||| || || || ||
Sbjct 166 GCTTCTCTGTAC-TCGTAATCGGAGT-CGTAGTTTTCACCATTATCGCTGCTACATATGA 223
Query 163 ACCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-T 221
|||||||||||| || || |||||||||||||||||||||||||||||||| |||| | |
Sbjct 224 ACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCCA-ATT 282
Query 222 CAAACGCTACACTGAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCATGGTAG 281
|||||||||| || | |||||| ||| |||| |||||||||||||||||||||| |
Sbjct 283 CAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATGGCGG 342
Query 282 CGAATCAAACCGCATTT-GCGGAGTTTATCAACATAACTGATGTTGAAGCAACCAATACC 340
|||| |||||||| ||| ||||| || ||||| ||| ||||||||| | || | || |
Sbjct 343 CGAACCAAACCGCGTTTGGCGGA-TTCATCAATATAGCTGATGTTG-A--AA-C-AT--C 394
Query 341 AATGAGACT-ACTTCAGAGGGAGAGGCTAATCAGTTGGAATGTGATGTGAATACT-CCAA 398
||||| | || || || || |||||| ||||| |||||| |||| | ||||
Sbjct 395 --TGAGAATGAC-TC----TGA-TGG-TAATCAATTGGATTGTGATACCAATA-TCCCAA 444
Query 399 TTGATTGCAAAGATCAAGAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGAGAAGTTT 457
||||||||||||||| ||||| ||||| ||| ||||||| ||||||||| |||||||||
Sbjct 445 TTGATTGCAAAGATCCTGAAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 503
Query 458 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTGGTTGGT-GAAGGT-GT-G-AATTC 513
||||| | ||||||||||||||||||||| |||||| || || |||||| || | | |||
Sbjct 504 AAAGACAGTCACTTTTATAAGTTTGGTAAACCTGTGATT-GTGGAAGGTAGTAGTAGTTC 562
Query 514 TTGTGATATGGCGTGGCGGTATAGGCCTAAAGATGG-GAAGAGTGCTGCTTTTTATAAGG 572
|||||||||||| ||||| ||||| ||||| ||||| ||| | ||||| ||||||||||
Sbjct 563 TTGTGATATGGCTTGGCGTTATAGACCTAAGGATGGTAAAGCG-GCTGCGTTTTATAAGG 621
Query 573 ATTATAGGAGGTTTGTTG-TTGGTAAGTCTGAGAATTGTAGTGTGAGTGTTG-TGGGGAT 630
||||||||||||||| || ||| ||||||| |||||||||||| |||| || |||||||
Sbjct 622 ATTATAGGAGGTTTG-TGATTGAAAAGTCTGGGAATTGTAGTGTTAGTG-TGATGGGGAT 679
Query 631 TGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGAAGAAGAATCAGAAAGCTGGGTT 690
||||||||||||||||||| |||||||||||||||||||| || | | |||||
Sbjct 680 TGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGTT 730
Query 691 TGAGAAA----ACTGGTGAG-AAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 744
| |||| | ||||| | ||| ||||||||| | |||||||| ||||||||| |
Sbjct 731 T-CGAAATTCGAGTGGTG-GTAAGGTTGATGATTTCGCATTGCCTGTAGTTGGTGAAGC- 787
Query 745 AGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAG-AGTGGCAAGTAT 802
|||||||||||| |||||| | ||||||||||| | ||||||| ||| || | | | ||
Sbjct 788 AGTGAATGATTCACTTCCTGTTGTTGAGTCTGAAAATGTGTTTAAAGAAG-GTC-ATTAC 845
Query 803 TTGGTTTATGT-TGGTGGAGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 860
||||||||| | |||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 846 TTGGTTTAT-TCTGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 903
Query 861 TTTTGTGTGCACTT-GGGGAAGCTCAGTATTTGAATAGGACTTTGGTGATGGATTTGACG 919
| |||||||| || ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 904 TCTTGTGTGC-TTTAGGGGAAGCTCAGTATTTGAATAGAACATTAGTGATGGATTTGAC- 961
Query 920 T-TGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGAAGGACTTTCG 978
| | |||||||||||| | || || | ||||||||| ||||||||||||||||||||| |
Sbjct 962 TCTTTGTTTGTCTTCTGTTTATACATTGTCTGGTCAAAACGAGGAAGGGAAGGACTTTAG 1021
Query 979 GTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGATGAAGTTCAGTT 1038
||||||||||||||||||||||||||| || ||||||||| |||| || | || |||||
Sbjct 1022 GTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTATGTTAGACCAGGTGCAGTT 1081
Query 1039 TTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAATATTCATCTCGT 1098
||||||| | ||||||||| || | | | ||||| ||| |||| || ||||||| ||
Sbjct 1082 TTGGGCTGATTGGGGGAAA-TG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATCTTGT 1135
Query 1099 GGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACGTTGATAATGAG 1158
||| |||||| ||||||| ||||||||||||| ||||| || || ||||||||||||||
Sbjct 1136 GGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAAGGACACGTTGATAATGAG 1195
Query 1159 GAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAAGGAGATG-CAG 1217
|||||| ||| | ||||||||||| || |||||||| ||||| || ||||| || | |||
Sbjct 1196 GAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGTATGCGAAGGGGA-GACAG 1254
Query 1218 AATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATC-AAGAAGGTTGATGGAAATT 1276
|||||||||| ||||||| ||| |||| || |||||||| || | | ||||||| |||
Sbjct 1255 AATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA-ACGACTGATGGAGATT 1313
Query 1277 GTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGC-AGTACACATTGAGAGAGG 1335
|| ||||||||||| || ||||||||||||||||| ||||| | | ||||||||||||||
Sbjct 1314 GTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTA-TTCACATTGAGAGAGG 1372
Query 1336 AGATAAAGCAAGAAACAAGG-AGCTGTGGCCTAATCTTGAAACGGATACTTCCCCGAGCG 1394
||| || || |||||||||| || | |||||||||||||||| ||||||||| || |||
Sbjct 1373 AGACAAGGCGAGAAACAAGGAAG-TTTGGCCTAATCTTGAAAAGGATACTTCACCAAGCT 1431
Query 1395 CTC-TTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATCGCAACA 1453
| | |||| || ||| | ||||||||| | ||| |||||||| |||| || || ||||||
Sbjct 1432 C-CATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCTTTATATTGCAACA 1490
Query 1454 AATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGT--ATGCCACTCATTTTC 1511
|||||| ||||||||| ||||| ||||| ||||||||||||| | || | |||||||
Sbjct 1491 AATGAACCAGAGTTATCTTTCTTTAACCCCTTGAAAGACAAGTACAAACC-C-CATTTTC 1548
Query 1512 TTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACAAAGC 1571
| | || | || ||||| |||||||||| ||||| |||||||||||||| || ||||
Sbjct 1549 TGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACAACGAAGC 1608
Query 1572 TTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACAGAAG 1631
|||||||||| ||||| || |||||||| |||||||||||||| |||||||| ||||| |
Sbjct 1609 TTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCTGTTGATACAGAGG 1668
Query 1632 TATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGCAAAG 1691
| ||||||||||||||||||||||||||||||||||| |||||||| || || || | ||
Sbjct 1669 TGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACTGTAGAG 1728
Query 1692 ATGGAGTTGGGACCTGCAA 1710
||||| | || || |||||
Sbjct 1729 ATGGAATCGGCACTTGCAA 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86395137945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5