BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930749
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04300.1 | Symbols: | Leucine-rich repeat protein kinase fa... 538 4e-152
AT1G51805.1 | Symbols: | Leucine-rich repeat protein kinase fa... 124 1e-27
> AT2G04300.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:1493009-1497016 FORWARD LENGTH=2658
Length=2658
Score = 538 bits (291), Expect = 4e-152
Identities = 361/396 (91%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 111 AGAGCTGCGACCACTTATAAACGATACCTACAATACGCAAAGCGGCTCGCTGAAATATTT 170
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 537 AGAGCTGCGACCACTTATAAACGATACTTACAATACTCAAAGTGGCTCGCTGAAATACTT 596
Query 171 ATTTCGGAATTATTTCAGCTCTTCAAGGAGACTAATAAGGTACCCGGATGATGTCAATGA 230
||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 597 ATTTCGGAATTATTTCAGCACTTCAAGGAGAATAATACGGTACCCGAATGATGTCAACGA 656
Query 231 TCGTCATTGGAATCCATACTTCGATGAGGATGTGTGGACAGAATTGACTACAAATCTCAA 290
|||||||||| |||| | ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 657 TCGTCATTGGTATCCGTTCTTTGATGAGGATGCGTGGACAGAATTGACTACAAATCTCAA 716
Query 291 TGTTAACAGTTCTAATGGTTATGATCCACCAAAATCTATAATGGCTTCGGCCGCAACACC 350
|||||||||||| |||||||||||||||||||||| | |||||||||| ||| |||||||
Sbjct 717 TGTTAACAGTTCAAATGGTTATGATCCACCAAAATTTGTAATGGCTTCAGCCTCAACACC 776
Query 351 CATAAGTAACAATGCGCCCTTCAACTTCACCTGGTCATTGATCCCCTCTACGGCCGAATT 410
||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 777 CATAAGTAAAAATGCGCCCTTCAACTTCACCTGGTCATTGATTCCTTCTACGGCCAAATT 836
Query 411 TTATAGCTACATGCACTTTGCTGATATTCAGACACTACGGGCCAATGATACCCGAGAATT 470
|||||| ||||||||||| || ||||||||||| |||| ||||||||| |||||||||||
Sbjct 837 TTATAGTTACATGCACTTCGCCGATATTCAGACTCTACAGGCCAATGAAACCCGAGAATT 896
Query 471 CAACTTTATATTGAATGGGAACGTTGCCTTGGAACG 506
| || | || |||||||| ||| |||||||||||||
Sbjct 897 CGACATGATGTTGAATGGAAACCTTGCCTTGGAACG 932
Score = 276 bits (149), Expect = 3e-73
Identities = 174/186 (94%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 765 TCTTGAAGGAAATATATATCTTAATTGTCCGGGTGGATCATGTGTACA-CAAAGACGGAA 823
||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 1353 TCTTGAAGGAAATATTTATCTTAATTGTCCGGATGGATCATGTGTA-AGCAAAGACGGAA 1411
Query 824 ATGGAGGTGCCAAGAAAAAGAATGTTCTAGTGTTGGTTGTGGTATCAATTGCAGTTGTGG 883
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
Sbjct 1412 ATGGAGGTGCCAAGAAAAAGAATGTTGTAGTATTGGTTGTGGTATCAATTGCACTTGTAG 1471
Query 884 TAGTTCTTGGAACTGCATTAGCTCtttttttGGTGTTTAGAAAAAGAAAAACACCGCACA 943
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1472 TAGTTCTTGGATCTGCATTAGCTCTTTTTTTGGTGTTTAGAAAAAGAAAAACACCACGCA 1531
Query 944 GTGAAG 949
|||||
Sbjct 1532 ATGAAG 1537
> AT1G51805.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:19220977-19225689 REVERSE LENGTH=2964
Length=2964
Score = 124 bits (67), Expect = 1e-27
Identities = 106/125 (85%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 641 TAACGGGGATCATTGCACCTGCCTTTCAAAACCTAACCCACCTAGAAATATTGGCCTTGT 700
|||| |||||||| || |||||| ||||||| || || ||||||||||||||||||||||
Sbjct 1343 TAACCGGGATCATCGCGCCTGCCATTCAAAATCTTACTCACCTAGAAATATTGGCCTTGT 1402
Query 701 CAAATAACAATTTGACAGGCGGAGTACCTGAGTTTCTTGCC-AGCATAAAATCACTTTTG 759
|||||||||||||||| || | ||||||||| ||||| || | | |||||||| | ||
Sbjct 1403 CAAATAACAATTTGACCGGAGAAGTACCTGAATTTCTAGCTGA-CTTAAAATCAATCATG 1461
Query 760 GTCAT 764
|||||
Sbjct 1462 GTCAT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5