BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930751
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04340.1 | Symbols: | unknown protein; Has 24 Blast hits to... 857 0.0
> AT2G04340.1 | Symbols: | unknown protein; Has 24 Blast hits
to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:1513512-1515540 FORWARD
LENGTH=984
Length=984
Score = 857 bits (464), Expect = 0.0
Identities = 520/548 (95%), Gaps = 0/548 (0%)
Strand=Plus/Plus
Query 1 GAAGATCCCTGTTTCTGGTTATGATGTCTCGGCAGAGTCAGTTATTTACATTGCTTAAGA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 106 GAAGATCCCTGTTTCTGGTTATGATGTCTCGACAGAGTCAGTTATTTACATTGCTTAGGA 165
Query 61 GAAGGTTTCATTCCCCGTCTAGTGATGCCCCAACGGAGACCTTAAGAAAGAAGATAGCCG 120
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 166 GAAGGTTTCATTCACCGTCTAATGATGCCCCAACGGAGACCTTAAGAAAGAAGATAGCCG 225
Query 121 ATTTGCAAAAGAGTAAGAAGCGAAGGAACCCAATAAAGAACCAGTTTCTAGTTGAGGTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ATTTGCAAAAGAGTAAGAAGCGAAGGAACCCAATAAAGAACCAGTTTCTAGTTGAGGTTC 285
Query 181 CAGAATCAAGATCGTATTTGGACACAGCAACGATGCCTATGTTCCTCGCTGTGGTCGGTA 240
||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 286 CAGAATCAAGATCATATTTAGACACAGCAACGATGCCTATGTTCCTCGCTGTTGTAGGTA 345
Query 241 TCGCATTGTTTGCAAAGGTGTTAATGATGATCGATGATTCGAAATCCCAAGAAATGATTG 300
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 346 TCGCATTATTTGCAAAGGTGCTAATGATGATCGATGATTCGAAATCGCAAGAAATGATTG 405
Query 301 AACGAAAGATAAAAAATGCACCACCGGGACAAGGCACAGTGCGGATGATCGAGCGAGAGG 360
|||| |||||||| |||||||||| ||| |||||||| || || |||||||| || ||||
Sbjct 406 AACGCAAGATAAAGAATGCACCACAGGGGCAAGGCACGGTACGAATGATCGATCGTGAGG 465
Query 361 AGTGGGATGAGTTTAGAGAAGTAAGGCCAAGAACACCTTTTGAGTCCAAGCTTGCTCGCC 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 466 AGTGGGATGAGTTTAGAGAAGTAAGGCCAAGAACACCTTTTGAGTCAAAGCTTGCTCGCC 525
Query 421 CAAATGCACAAATAAGAACTGGAGAACCTGTGCGCAAGGATGACTTGAAAAACTGGACAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CAAATGCACAAATAAGAACTGGAGAACCTGTGCGCAAGGATGACTTGAAAAACTGGACAA 585
Query 481 TAGATGTGCTAACAAACGCACTGGAACGAACCGAAGAAAGTGTTCGCCGCAGATCCAGTT 540
|||| ||||||||||| || || |||||||||||||||||||||||||| | |||||||
Sbjct 586 TAGACGTGCTAACAAATGCTCTTGAACGAACCGAAGAAAGTGTTCGCCGTGGTTCCAGTT 645
Query 541 AGATTTTC 548
||||||||
Sbjct 646 AGATTTTC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5