BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930770

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04520.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   765    0.0   
  AT5G35680.3 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   499    9e-141


> AT2G04520.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr2:1574592-1575863 REVERSE LENGTH=817
Length=817

 Score =  765 bits (414),  Expect = 0.0
 Identities = 448/465 (96%), Gaps = 0/465 (0%)
 Strand=Plus/Plus

Query  16   GATACCATGCcgaagaacaagggaaagggaggaaagaacaggaagagaggaaagaacgaa  75
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  GATACTATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAA  223

Query  76   gcggacgacgagaagCGTGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTC  135
            || || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  GCAGATGACGAGAAGAGAGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTC  283

Query  136  CTTCGTATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTT  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  CTTCGTATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTT  343

Query  196  TGCCATATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCAGGTGACATTGTACTT  255
            ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct  344  TGCCATATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCAGCAGGTGATATTGTGCTT  403

Query  256  GTTGGTTTGAGGGATTACCAAGATGATAAAGCGGATGTGATTCTCAAGTATATGTCTGAT  315
            |||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct  404  GTTGGTTTGAGGGATTACCAAGATGACAAAGCGGATGTGATCCTTAAGTACATGTCTGAT  463

Query  316  GAGGCTAGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGA  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  464  GAGGCTAGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGA  523

Query  376  ATTGTTGGTGATCTTGAAGATGATGATGATAATAATGGCGATGACTATGTTGAGTTTGAA  435
            ||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||| 
Sbjct  524  ATTGTTGGTGATCTTGAGGATGATGATGATAATAATGATGATGACTATGTTGAGTTTGAG  583

Query  436  GACGAAGATATCGATAGGATCTAAGGCTTTGTTTGTGtttttttt  480
            |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  584  GACGAAGATATCGATAGGATCTAAGGCTTTGTTTGTTTTTTTTTT  628


> AT5G35680.3 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr5:13857921-13859013 REVERSE LENGTH=758
Length=758

 Score =  499 bits (270),  Expect = 9e-141
 Identities = 346/384 (90%), Gaps = 0/384 (0%)
 Strand=Plus/Plus

Query  22   ATGCcgaagaacaagggaaagggaggaaagaacaggaagagaggaaagaacgaagcggac  81
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  142  ATGCCGAAGAACAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCTGAT  201

Query  82   gacgagaagCGTGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTCCTTCGT  141
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  202  GACGAAAAGCGAGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTTCTTCGT  261

Query  142  ATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTTTGCCAT  201
            ||||| || || ||  |||| || | |||||| || || ||    |||||||||||||||
Sbjct  262  ATGCTCGGTAACGGTCGATGCGACGTTATGTGCATTGACGGTGTTAAGCGTCTTTGCCAT  321

Query  202  ATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCAGGTGACATTGTACTTGTTGGT  261
            ||||||||||||||||| ||||||||||||||||| || ||||||||  |||||||||||
Sbjct  322  ATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCTGCTGGTGACATCATACTTGTTGGT  381

Query  262  TTGAGGGATTACCAAGATGATAAAGCGGATGTGATTCTCAAGTATATGTCTGATGAGGCT  321
             | || |||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct  382  CTAAGAGATTACCAGGATGATAAAGCTGATGTTATACTCAAGTATATGTCTGATGAGGCT  441

Query  322  AGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGAATTGTT  381
            |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct  442  AGGCTTCTTAAGGCGTATGGTGAGCTTCCGGAGAATACTCGTCTTAACGAAGGTATTGTT  501

Query  382  GGTGATCTTGAAGATGATGATGAT  405
            ||||||||||| ||||||||||||
Sbjct  502  GGTGATCTTGATGATGATGATGAT  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5