BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930774
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04550.1 | Symbols: IBR5, DSPTP1E | indole-3-butyric acid re... 1299 0.0
> AT2G04550.1 | Symbols: IBR5, DSPTP1E | indole-3-butyric acid
response 5 | chr2:1588360-1590166 FORWARD LENGTH=1280
Length=1280
Score = 1299 bits (703), Expect = 0.0
Identities = 761/790 (96%), Gaps = 0/790 (0%)
Strand=Plus/Plus
Query 18 ATTATGAGGAAGAGAGAAAGAGAGAACCCTTGTTCGATTTGTGGGCATTACCATAAGTAC 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ATTATGAGGAAGAGAGAAAGAGAGAACCCTTGTTCGATTTGTGGGCATTACCATAAGTAC 235
Query 78 GAGGAAGGTGAAGTATGTGGAGTCTGTGGTCACTGTATGCCTGTTTCTTCCGATACAGTG 137
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 236 GAGGAAGGAGAAGTATGTGGAGTCTGTGGTCACTGTATGCCTGTTTCTTCCGATACGGTG 295
Query 138 GCGGCGCAACAAGTCCACGTCAGTGCTTTTCCGTCGGAGATTCTCCCTGAGTTTCTTTAC 197
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GCGCCGCAACAAGTCCACGTCAGTGCTTTTCCGTCGGAGATTCTCCCTGAGTTTCTTTAC 355
Query 198 CTCGGTAGTTACGACAACGCTTCTCGCTCTGAGCTTCTTAAGACTCAGGGGATTTCTCGT 257
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 356 CTCGGTAGTTACGACAACGCTTCTCGCTCTGAGCTTCTTAAGACTCAAGGAATCTCTCGT 415
Query 258 GTTCTTAATACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTTCTTAATACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGT 475
Query 318 CTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATCAAGTTTTTAGACCAATGTGAG 377
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 476 CTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGACCAATGTGAG 535
Query 378 AAGGACAAGGCACGTGTTCTTGTGCATTGTATGTCTGGGAAAAGTAGATCACCGGCGGTT 437
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 536 AAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGAAAAGTAGATCACCAGCGGTT 595
Query 438 GTTATAGCGTACTTGATGAAGCGTAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTT 497
||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 596 GTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTT 655
Query 498 AAACAACGGAGACCAAGTACAGACATAAGTCCAGAGTTTTACCAACAACTGCAGGAGTTT 557
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAACAACGGAGACCAAGCACTGACATAAGTCCAGAGTTTTACCAACAACTGCAGGAGTTT 715
Query 558 GAGCACTCGATATTCGGATCTGGGATGATTTCGGCGATGAATATCAACGATGCTCCAACA 617
||||| |||||||||||||| |||||| |||||||||||||| || |||||||||||
Sbjct 716 GAGCAGGGGATATTCGGATCTGAGATGATGTCGGCGATGAATATTAATGATGCTCCAACG 775
Query 618 TTTGGGTTTGGTTTCCCTAAGATTGATAATCAAGCACAAGCACCTGTGTTCAACAATGCT 677
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 776 TTTGGGTTTGGTTTCCCTAAGATTGATAATCAAGCACAAGCTCCTGTGTTCAACAATGCT 835
Query 678 CCTACTTCTTCTATATTTTCATCTCCTGCTTCAAGTATCCCTCCTCAAGAGTTCACTTTT 737
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 CCTACTTCTTCTATATTTTCATCTCCTGCTTCAAGTATCCCTCCTCAGGAGTTCACTTTT 895
Query 738 GGAGCAACTCCACCAAAGCCAACAACCGGTGGTGATATCGCCATGGATGGCTCCTAGAAC 797
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||
Sbjct 896 GGAGCAACTCCACCAAAGCCAACAACTGGTGGTGATATTGCAATGGATGGCTCTTAGAAC 955
Query 798 CAGATAATCA 807
||||||||||
Sbjct 956 CAGATAATCA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5