BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930777
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04570.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1748 0.0
> AT2G04570.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr2:1594673-1596349 FORWARD LENGTH=1347
Length=1347
Score = 1748 bits (946), Expect = 0.0
Identities = 1048/1097 (96%), Gaps = 7/1097 (1%)
Strand=Plus/Plus
Query 1 ATAACCAC-AAAATAAACACTATGGGACAACTCAAAAGTCTCTTCACAATTCTTTTCCTA 59
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 54 ATAACCACAAAAACAAACACTATGGGACACCTCAAAAGTCTCTTCACAATTCTTTTCCTA 113
Query 60 ATAGCTATGT-TGCCAGCCGTAACATTTGCCGGTAAAATACCGGCGATCATCGTGTTTGG 118
|||||||||| | || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 114 ATAGCTATGTCT-TCAACCGTAACATTTGCCGGTAAAATACCCGCGATCATCGTGTTTGG 172
Query 119 CGACTCTTCGGTTGACGCTGGGAACAACAATTATATCCCAACTGTTGCGAGAAGTAACTT 178
||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 173 CGACTCTTCCGTTGATGCCGGGAACAACAACTATATCCCAACTGTTGCTAGAAGCAACTT 232
Query 179 CGAGCCATATGGACGGGACTTTGTTGGTGGAAAGCCGACCGGGCGGTTTTGTAACGGAAA 238
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 TGAGCCATATGGACGGGACTTTGTTGGTGGAAAGCCGACCGGACGGTTTTGTAACGGAAA 292
Query 239 GATTGCAACGGATTTTATGTCCGAAGCCTTAGGGCTTAAACCAATAATTCCAGCATACTT 298
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 293 GATTGCGACGGATTTTATGTCCGAAGCCTTAGGGCTTAAACCAATCATTCCGGCGTACTT 352
Query 299 GGATCCTTCTTATAACATTTCAGATTTTGCAACAGGTGTCACCTTTGCTTCCGCTGCCAC 358
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 353 GGATCCTTCTTATAACATTTCGGATTTTGCAACAGGTGTTACCTTTGCTTCTGCTGCCAC 412
Query 359 TGGCTATGACAACGCCACTTCTGATGTTCTGTCGGTACTACCTCTATGGAAACAACTCGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TGGCTATGACAACGCCACTTCTGATGTTCTGTCGGTACTACCTCTATGGAAACAACTCGA 472
Query 419 ATACTACAAAGAATACCAAACAAAACTTAAAGCATACCAAGGAAAAGAAAGAGCCACAGA 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 473 ATACTACAAAGAATACCAAACAAAACTTAAAGCATACCAAGGAAAAGACAGAGGCACAGA 532
Query 479 GACTATAGACAA-CTCTCTCTACCTCATAAGCATAGGGACCAACGATTTCCTCGAGAATT 537
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GACTATAGA-AAGCTCTCTCTACCTCATAAGCATAGGGACCAACGATTTCCTCGAGAATT 591
Query 538 ACTTTGCCTTTCCAGGCCGTTCTTCGCAATACTCGGTCAGTCTTTACCAAGATTTTCTAG 597
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 592 ACTTTGCCTTTCCGGGCCGTTCTTCGCAATATTCCGTCAGTCTTTACCAAGATTTTCTAG 651
Query 598 CCGGAATCGCGAAAGACTTTGTGAAGAAGTTGCATGGACTTGGTGCAAAGAA-GATCTCA 656
|||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 652 CCGGAATCGCGAAAGAATTTGTGAAGAAGTTGCATGGACTTGGTGCTA-GAAAGATCTCA 710
Query 657 CTAGGTGGATTGCCTCCAATGGGATGCATGCCTTTAGAGAGAGCCACCAACATTGGCACA 716
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTAGGTGGGTTACCTCCAATGGGATGCATGCCTTTAGAGAGAGCCACCAACATTGGCACT 770
Query 717 GGAGGTGAGTGCGTTGGACGGTACAACGACATAGCGGTCCAGTTCAACAGCAAGCTTGAG 776
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 771 GGAGGTGAGTGCGTAGGACGGTACAACGACATAGCCGTCCAGTTCAACAGCAAGCTTGAT 830
Query 777 AAGATGGTTGAGAAGCTGAGCAAAGAGCTTCCTGGTTCCACCCTCGTTTTCTCAAATCCC 836
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 831 AAGATGGTTGAGAAGCTGAGCAAAGAGCTCCCTGGTTCCAACCTCGTTTTCTCAAATCCC 890
Query 837 TATGAACCATTTATGCGGATCATCAAGAACCCTTCCTCTTTTGGGTTCGAGGTGGTGGGA 896
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 891 TATGAGCCATTTATGCGGATCATCAAGAACCCTTCCTCCTTTGGGTTCGAGGTGGTGGGA 950
Query 897 GCGGCATGTTGCGCAACAGGGATGTTCGAGATGGGATATGGTTGCCAAAGGAATAACCCA 956
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 951 GCGGCATGTTGCGCGACAGGGATGTTCGAGATGGGATATGGTTGTCAAAGGAATAACCCA 1010
Query 957 TTCACATGTACCAACGCAGACAAGTATGTGTTTTGGGACTCATTTCACCCAACACAGAAG 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TTCACATGTACAAACGCAGACAAGTATGTGTTTTGGGACTCATTTCACCCAACACAGAAG 1070
Query 1017 ACTAATCACATCATGGCCAATGCTCTCATGAACAGCACATTCCCTCACTTCCTCTAAATG 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 ACTAATCACATCATGGCCAATGCTCTCATGAACAGCACATTCCCTCACTTCCTCTAAATT 1130
Query 1077 GTTTTTATGTTTGTGTG 1093
||||||||||||||||
Sbjct 1131 ATTTTTATGTTTGTGTG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5