BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930782
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04620.1 | Symbols: | Cation efflux family protein | chr2:1... 1943 0.0
> AT2G04620.1 | Symbols: | Cation efflux family protein | chr2:1610506-1612902
REVERSE LENGTH=2397
Length=2397
Score = 1943 bits (1052), Expect = 0.0
Identities = 1168/1226 (95%), Gaps = 0/1226 (0%)
Strand=Plus/Plus
Query 1 GTTACTGTGGTGCTGCTGCTATGATATTAGCTGAACTCTCTGGTACTGTCTCAGCTAGAG 60
||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||||
Sbjct 485 GTTACTGTGGTGCTGCTGCTATGATCTTAGCTGAACTCTCTGGCACAGTTTCAGCCAGAG 544
Query 61 TCTTGTCTGGTGATAATAGTGGAATTGGAGTTAGATCATCTAAGGTTCGTGGGTTTTGCG 120
|||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCTTGTTTAGTGATACTGGTGGAATTGGAGTTAGATCATCTAAGGTTCGTGGGTTTTGCG 604
Query 121 TTTTGTTTGCTGGGTTGTTGTTGTTATCTATCAGCTGGGATCGTGTTGATTGTTTCCCTT 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 605 TTTTGTTTGCTGGGTTGTTGTTGTTATCAATCAGCTGGGATCGTGTTGATTGTTTCCCGT 664
Query 181 TTTCATCATCTGTTGAAAGTTGGGGTTTTTGGATTTACCCTAAAGAGAATTGCTTGAGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTTCATCATCTGTTGAAAGTTGGGGTTTTTGGATTTACCCTAAAGAGAATTGCTTGAGGA 724
Query 241 TTTGGCCTTTGTTGCTTCCGTTTCTATCTGGGTTCTTGGGTTGTTATGAGAAAGTTTCTT 300
|||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 725 TTTGGCCTCTGTTGCTTCCGTTTCTATCTGGTTTCTTAGGTTGTTATGAGAAAGTTTCTG 784
Query 301 TGAATTGGAATGAGATCAAACAGTTAGATCAGAAACGAGTTCGATTACTGTCTTTGTTTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TGAATTGGAATGAGATCAAACAGTTAGATCAGAAACGAGTTCGATTACTGTCTTTGTTTC 844
Query 361 TAACCACTTTGTTGTTGTTCCCACTTGCTATTTGGAGTTTCTTGTTCTCTGGTAGTGGTG 420
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 845 TAACCACTGTGTTGTTGTTCCCACTTGCTATTTGGAGTTTCTTCTTCTCTGGTAGTGGTG 904
Query 421 ATGATGGTGTCTCTTTTGGGAATTTAGGTTGGCCTTTAGCTAACACTGTTGTATTTGGAG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 ATGATAGTGTCTCTTTTGGGAATTTAGGTTGGCCTTTAGCTAACACTGTTGTATTTGGAG 964
Query 481 TATTGTTGAGTGAGAATTATAATGACGATAAGTTTTCGAGCTCGAAGAAGAAGGATTCAG 540
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 965 TGTTGTTGAGTGAGAATTATAATGATGATAAGTTTTCAAGCTCGAAGAAGAAGGACTCAG 1024
Query 541 TGAGGGAGTTTCTTGTAACGTTTCTATGTACTATTGTATTGGAACTCTTCTATTTTCCTG 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1025 AGAGGGAGTTTCTTGTAACGTTTCTATGTACTATAGTATTGGAACTCTTCTATTTTCCTG 1084
Query 601 AGTTATCTCTTTGGGGATTGTTGCTTTGTGGTTTGTTGCTTTATGTTGCTGTTAGAGAGT 660
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1085 AGCTATCTCTTTGGGGATTGTTGCTTTGTGGTTTGTTGCTTTACATTGCTGTTAGAGAGT 1144
Query 661 TGGACTCTGTGTATTCAGATTATCAAGAGATTGGGATGGAATCGCCTGAGTCGTTTTCAA 720
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1145 TGGAGTCTGTGTATTCAGATTATCAAGAGATTGGTATGGAATCGCCTGAGTCGTTTTCCA 1204
Query 721 CTATGTTTATGAAGCCTCTACGCCACATTTTGAGCGAGAAGAAATCGAGGAAGATTGCGT 780
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1205 CTATGTTTATGAAGCCTATCCGTCACATTTTGAGCGAGAAGAAATCGAGGAAGATTGCGT 1264
Query 781 TGTTTCTTTTGATCAATACGGCGTATATGGTTGTTGAGTTTGTGGCTGGGTTTATGAGTA 840
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1265 TGTTTCTTTTGATTAATACGGCGTATATGGTGGTTGAGTTTGTGGCTGGTTTTATGAGTA 1324
Query 841 ACAGTCTTGGATTGATCTCAGACGCTTGTCATATGTTGTTTGATTGTGCTGCTTTGGCAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 ACAGTCTTGGATTGATCTCAGACGCTTGTCATATGTTGTTTGATTGTGCTGCTTTGGCAA 1384
Query 901 TTGGGCTATATGCGTCTTATATCTCCCGTCTTCCTGCAAACCATCAGTACAACTATGGCC 960
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1385 TTGGGCTGTATGCGTCTTATATCTCTCGTCTTCCTGCAAACCATCAGTATAACTATGGCC 1444
Query 961 GAGGTAGATTTGAAGTTCTTTCTGGTTATGTCAACGCGGTGTTCCTTGTTCTTGTTGGAG 1020
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1445 GAGGTAGATTTGAAGTGCTTTCTGGTTATGTTAACGCGGTGTTCCTTGTTCTTGTTGGGG 1504
Query 1021 CTTTGATTGTGCTTGAGTCGATTGAGAGAATCTTGGATCCTCAGGAGATTTCTACGAATA 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1505 CTCTGATTGTGCTTGAGTCGATTGAGAGAATCTTGGATCCTCAGGAGATTTCTACAAATA 1564
Query 1081 GTCTTTTGGTTGTTTCAGTTGGTGGGCTTCTCGTGAATATTGTCGGGTTAATCTTTTTCC 1140
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1565 GTCTTTTGGTTGTTTCGGTTGGTGGGCTTCTCGTGAATATCGTCGGGTTAATCTTTTTCC 1624
Query 1141 ACGAGGAACATCATCATGCTCATGGTGGATCTGGTTGCACGCATTCTCATTCGCAACATT 1200
|||||||||||||||||||||||||||||||||||||||| |||||||| || || || |
Sbjct 1625 ACGAGGAACATCATCATGCTCATGGTGGATCTGGTTGCACACATTCTCACTCACACCAAT 1684
Query 1201 CCTATGGCCACAAACATGATGACCAT 1226
|| || |||| ||| |||| || |||
Sbjct 1685 CCCATAGCCATAAAAATGAGGAGCAT 1710
Score = 761 bits (412), Expect = 0.0
Identities = 476/508 (94%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 1256 CCACAACCATGAGCATCATTCTGGTCACAAACTTGAAAAAAGTGAAAAGAAGGAGCATCG 1315
||||||||| || |||||||||| |||| ||| ||||||||| |||||||||||||||||
Sbjct 1890 CCACAACCACGACCATCATTCTGATCACCAACCTGAAAAAAGCGAAAAGAAGGAGCATCG 1949
Query 1316 CCACATTGACCACAACATGGAAGGAATCTTTCTTCATGTTTTAGCAGACACAATGGGGAG 1375
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 CCACATTGATCACAATATGGAAGGAATCTTTCTTCATGTTTTAGCAGACACAATGGGGAG 2009
Query 1376 TGTTGGAGTTGTGATATCGACACTCTTGATCAAATACAAGGGCTGGTTAGTTGCTGATCC 1435
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2010 TGTTGGAGTTGTGATATCGACACTCTTGATTAAATACAAGGGCTGGTTAGTTGCAGATCC 2069
Query 1436 AGCCAGCTCAATCTTCATTTCCATCCTCATCATTGCTTCAGTCATTCCATTGCTCCGAAA 1495
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 2070 AGCCAGCTCAATCTTTATCTCCATCCTCATCATCGCTTCAGTCATTCCGTTGCTACGAAA 2129
Query 1496 CTCTGCAGAGATTCTACTGCAAAGAGTCCCTCGGGCTCACAGACACGACCTGCGAGAAGC 1555
|||||| |||||||||||||||||||||||| |||||||||| || |||||| ||||||
Sbjct 2130 CTCTGCGGAGATTCTACTGCAAAGAGTCCCTAGGGCTCACAGGCAAGACCTGAAAGAAGC 2189
Query 1556 TATGAGGAACATACTTAAGACTAAAGGTGTTTGTAGTATCCAGAGACTGCATGTATGGAG 1615
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2190 TATGAGGAACATACTTAAGACTAAAGGTGTTTGCAGTATCCAGAGGCTGCATGTATGGAG 2249
Query 1616 TTTCACGAACTCAGACGTCGTGGCTACTCTCCATCTCCTTGTATCAGCGGATTCAGACAA 1675
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2250 TTTCACCAACTCAGACGTCGTGGCTACTCTCCATCTCCTTGTATCTGCAGATTCAGACAA 2309
Query 1676 GACGGAAACTAAGTTACAAGTCTCACGTCTGTTAGAAGATGCAGGAGTAAAGGATTTGAC 1735
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 2310 GACGGATACTAAGTTACAAGTGTCACGTTTGTTAGAAGATGCAGGAGTAAAGGATTGGAC 2369
Query 1736 TTTGCAGGTGGATTCTGTTAACTCATAG 1763
||||||||||| |||||||||||||||
Sbjct 2370 ATTGCAGGTGGAATCTGTTAACTCATAG 2397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88252558110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5