BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930784
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04630.1 | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 | c... 717 0.0
AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase ... 678 0.0
> AT2G04630.1 | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 |
chr2:1618936-1620336 REVERSE LENGTH=757
Length=757
Score = 717 bits (388), Expect = 0.0
Identities = 441/467 (94%), Gaps = 2/467 (0%)
Strand=Plus/Plus
Query 1 CGATTTCTCAAATCGACTTTAATGGCTGACGAAGATTACAACGAAGTCGATGACTTGGGA 60
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 70 CGATTTCTCAAATCGACTTTAATGGCTGACGACGATTACAATGAAGTCGATGACTTGGGA 129
Query 61 TATGAGGATGAGCCAGTTGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATATC 120
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TATGAAGATGAGCCAGCAGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATATC 189
Query 121 AAGGAGAACGATGATGTTAATGGTGAGCCTATGGAAACAGAAGATAAGGTTGAAACAGAA 180
|||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 190 AAGGAGAACGATGATGTTAATGTTGACCCTTTGGAAACAGAAGATAAGGTTGAAACAGAA 249
Query 181 CCTGTGCAACGTCCACGTAAAACGTCCAAGTTTATGACCAAGTATGAACGTGCACGTATC 240
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 250 CCTGTGCAACGCCCACGTAAAACCTCTAAGTTTATGACTAAGTATGAACGTGCACGTATC 309
Query 241 CTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTGGAGGGT 300
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 310 CTCGGCACTCGTGCTTTGCAGATTAGCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGT 369
Query 301 GAGACTGATCCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTTACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GAGACTGATCCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTTACC 429
Query 361 ATTAGACGATATCTACCTGATGGGAGTTTTGAAGAATGGGGAGTCGATGAACTGATCGTG 420
|||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 430 ATTAGACGTTATCTACCTGATATGAGTTACGAGGAATGGGGAGTTGATGAACTGATCGTC 489
Query 421 GAAGACTCGTGGAAACGTCAAGTTGGTGGTGATTGATAA--TCTGGC 465
||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 490 GAAGACTCGTGGAAACGTCAAGTCGGTGGTGATTGATAAAATCTGGC 536
> AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase
Rpb6 | chr5:21104571-21105947 FORWARD LENGTH=694
Length=694
Score = 678 bits (367), Expect = 0.0
Identities = 433/466 (93%), Gaps = 0/466 (0%)
Strand=Plus/Plus
Query 10 AAATCGACTTTAATGGCTGACGAAGATTACAACGAAGTCGATGACTTGGGATATGAGGAT 69
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 97 AAATCGACATTAATGGCTGACGAAGATTACAACGACGTCGATGACTTGGGATATGAGGAT 156
Query 70 GAGCCAGTTGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATATCAAGGAGAAC 129
||||||| ||||||||||| |||||||||||||||||||||| ||| || ||||||||
Sbjct 157 GAGCCAGCAGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGATGTTGAAATGAAGGAGAAT 216
Query 130 GATGATGTTAATGGTGAGCCTATGGAAACAGAAGATAAGGTTGAAACAGAACCTGTGCAA 189
|||||||| |||||||||||||| ||| | |||||||| || ||||||||||||||||||
Sbjct 217 GATGATGTCAATGGTGAGCCTATTGAAGCTGAAGATAAAGTCGAAACAGAACCTGTGCAA 276
Query 190 CGTCCACGTAAAACGTCCAAGTTTATGACCAAGTATGAACGTGCACGTATCCTCGGCACT 249
|||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 277 CGTCCACGCAAAACGTCAAAGTTTATGACCAAGTATGAGCGTGCTCGTATCCTCGGCACT 336
Query 250 CGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTGGAGGGTGAGACTGAT 309
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 337 CGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTAGAGGGTGAGACTGAT 396
Query 310 CCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTTACCATTAGACGA 369
|||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||
Sbjct 397 CCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATACCATTCACTATTAGACGC 456
Query 370 TATCTACCTGATGGGAGTTTTGAAGAATGGGGAGTCGATGAACTGATCGTGGAAGACTCG 429
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 457 TATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAACTGATCGTGGAAGACTCA 516
Query 430 TGGAAACGTCAAGTTGGTGGTGATTGATAATCTGGCAAGAGACAAA 475
|||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 517 TGGAAACGTCAAGTTGGTGGTGATTGATAATCTGACCAGAGACAAA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22705834444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5