BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930788

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04700.1 | Symbols:  | ferredoxin thioredoxin reductase cata...   785    0.0  


> AT2G04700.1 | Symbols:  | ferredoxin thioredoxin reductase catalytic 
beta chain family protein | chr2:1646807-1648560 FORWARD 
LENGTH=810
Length=810

 Score =  785 bits (425),  Expect = 0.0
 Identities = 464/483 (96%), Gaps = 1/483 (0%)
 Strand=Plus/Plus

Query  3    CAAATACCa-aaaaaaCTCCATGAATCTTCAAGCTGTTTCTTGTAGTTTCGGATTCGTTT  61
            ||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct  135  CAAATTCCAGAAAAAACTCGATGAATCTTCAAGCTGTTTCTTGTAGCTTCGGATTCCTTT  194

Query  62   CGAGTCCACTTGGTGTCACTCCCAGAACTTCCTTTCGTCGCTTCGTAATCCGAGCCAAAA  121
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  195  CGAGTCCACTTGGTGTCACTCCCAGAACTTCGTTTCGTCGCTTCGTAATCCGAGCGAAAA  254

Query  122  CGGAACCTTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCTGAGCAATATGCTCGTC  181
            ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  255  CGGAACCGTCGGAGAAATCAGTAGAGATTATGAGGAAATTCTCCGAGCAATATGCTCGTC  314

Query  182  GCTCTGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGG  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  315  GCTCTGGGACTTACTTCTGTGTTGATAAAGGAGTTACTTCAGTCGTTATTAAGGGTTTGG  374

Query  242  CTGAGCATAAAGATTCGTATGGTGCACCACTTTGTCCTTGCAGACACTATGATGATAAAG  301
            |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  375  CTGAGCATAAAGATTCATATGGTGCACCGCTTTGCCCTTGCAGACACTATGATGATAAAG  434

Query  302  CTGCTGAGGTTGGACAGGGGTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGGAAGG  361
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  435  CTGCTGAGGTTGGACAAGGCTTTTGGAATTGTCCGTGTGTTCCAATGAGAGAGAGGAAGG  494

Query  362  AGTGCCATTGTATGCTTTTCTTAACTCCTGATAATGATTTCGCTGGAAAGGATCAGACGA  421
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  495  AGTGCCATTGTATGCTTTTCTTAACTCCTGATAATGATTTCGCTGGAAAAGATCAGACGA  554

Query  422  TTACATCGGATGAAATAAAAGAAACCACAGCTAACATGTGAGAGAATTGGTTCTTCGATG  481
            ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| |||
Sbjct  555  TTACATCGGATGAAATAAAAGAAACTACAGCTAACATGTGAGAGAGCTGGTTCTTCCATG  614

Query  482  TTC  484
            |||
Sbjct  615  TTC  617



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5