BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930794

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083...   215    3e-55


> AT4G08110.1 | Symbols:  | transposable element gene | chr4:5083926-5086640 
REVERSE LENGTH=2715
Length=2715

 Score =  215 bits (116),  Expect = 3e-55
 Identities = 146/160 (91%), Gaps = 4/160 (3%)
 Strand=Plus/Plus

Query  154   AGAGAATGCTCGACGTGATGCGGAGCAACAAGC-ATCTCAAACTCGGATTGCAAACTTGG  212
             ||| ||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct  2221  AGAAAATGCTCGACGTGATGCAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGG  2279

Query  213   AGAGGCTTGTTAT-GTATTGGAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCT  271
             ||| ||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct  2280  AGATGCTTG-TATCGTATTGGAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCT  2338

Query  272   CAGCCACAACCAACTGCACCAGCCAACACACAAGCCGCCA  311
             |||||||| |||||||||||||||| ||||| |||| |||
Sbjct  2339  CAGCCACATCCAACTGCACCAGCCACCACACCAGCCACCA  2378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5