BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930800
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04810.1 | Symbols: | Protein of unknown function (DUF295) ... 1423 0.0
AT2G04840.1 | Symbols: | Protein of unknown function (DUF295) ... 656 0.0
AT2G04830.1 | Symbols: | Protein of unknown function (DUF295) ... 468 6e-131
> AT2G04810.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1688773-1689966 FORWARD LENGTH=1194
Length=1194
Score = 1423 bits (770), Expect = 0.0
Identities = 1063/1199 (89%), Gaps = 41/1199 (3%)
Strand=Plus/Plus
Query 21 gatga-ataagaagaagagacaaaaagtgcctaaaaaTGGCGATTGGTCCAAGCTTTGTC 79
||||| | ||||| ||||||||||||||| ||| |||| | |||||||||||||||||||
Sbjct 21 GATGAGA-AAGAATAAGAGACAAAAAGTGTCTAGAAATAGTGATTGGTCCAAGCTTTGTC 79
Query 80 CCGATGTTTTGCGAAAGATATTCGAAACCTTAAGCAGCCCTGTTGATTCCCACCGCGCAA 139
||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 80 CCGATGTTTTGCGGAAGATATACGAAACCTTAAGGAGCCCTGTTGATTCTCACCGCGCAA 139
Query 140 AAATCGTTTGCTCGGGTTGGTATTCCGTTTGGAAAACATGCGCAAAGAGGCCTCCATGTC 199
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 140 AAATCGTTTGCTCGAATTGGTATTCCGTTTGGAAAACATGCGTGAAGAGGCCTCTATGTC 199
Query 200 CATTGAGGATAATACACCAAGGTGATTCTCCCACCTTAGGAAAAGGCAACAGAAAACTCG 259
|| |||||||||| |||||||| |||||||||||| ||||| | |||||||||||||||
Sbjct 200 CACTGAGGATAATTCACCAAGGCGATTCTCCCACCGTAGGAGACGGCAACAGAAAACTCA 259
Query 260 TCGGACTCTTCCAGCACAGA-AGCTATTGTATGGCTAGCTCCGGAAACTGGCTTCTGATG 318
| ||| || ||| ||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 260 TGGGATTC-TCC--TACA-ACAGCTATTGTATGGCTAGCTCCGGAAACTGGCTCCTGATG 315
Query 319 GTTGAGC-TTCGTCTCAAATTCTATATTTATAACTTGTTGACGAAGGAAAGGATCGATCT 377
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GTTGATCGTT-GTCTCAAATTCTATATTTATAACTTGTTGACGAAGGAAAGGATCGATCT 374
Query 378 TCCATCGATGGAGTCGCAAATACTTGGCGGGCAAGTAAGGTTCAAACCTGGAAGAG-AA- 435
||||||||||||||| |||||| ||||||||||||||| |||||| || || || ||
Sbjct 375 TCCATCGATGGAGTCAAAAATACGTGGCGGGCAAGTAAGCTTCAAATCT--AAAAGCAAC 432
Query 436 TATTTCCA---TGGATACTTGGTCGGGCCTTCTCGT-AGG--GATAAAGTGCCGTTTGAC 489
||| | | ||||||||||||||||||||||||| ||| |||| |||||||| ||||
Sbjct 433 AATTACAATTTTGGATACTTGGTCGGGCCTTCTCGTAAGGATGATATAGTGCCGTATGAC 492
Query 490 TATGAAGCCGTTGAATGGGAGAAATCGTTAGCTGTTCTGTGGGTAAACGACACAACAGGG 549
|||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||
Sbjct 493 TATGAAGCCGTTGAATGGAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGA 552
Query 550 GATTATGTC-GTTGCTTGGACTTTTATACAAAAATATTTGTTCTCATACATGAAAGGAGA 608
||||||| | ||||||||||||||||| | | |||| |||||||||||||| ||||||||
Sbjct 553 GATTATG-CAGTTGCTTGGACTTTTATGCGACAATACTTGTTCTCATACATAAAAGGAGA 611
Query 609 TGGTTTTTGGCG-AGATTTGAATTC-TAATGGAAAAAGTTTGGTTTTGTTTGATATGGCT 666
| || |||| | | || |||| || |||||| |||||||||||||||||||||||||||
Sbjct 612 TTATTCTTGGTGTA-ATCTGAA-TCATAATGGGAAAAGTTTGGTTTTGTTTGATATGGCT 669
Query 667 TGTGAGGACAGTATGCTTTATCTGTTGACAATTGATCATCACATCAAGATTTTCAATTTC 726
|||||| ||| || ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 670 TGTGAGAACAATAAGCTTTATTTGTTGACAATGGATCATCACATCAAGATTTTCAATTTC 729
Query 727 TTTGGAGATATTTTCACAGGAAAACAAAACCGGTATTGGGGTCGTCCGTTTAACTTCGTT 786
| ||||||| |||| |||||| ||||||||| | || ||||||||||||||||
Sbjct 730 TATGGAGATTTTTTAACAGGAGAACAAAACC-----T---GT-ATCCGTTTAACTTCGTT 780
Query 787 GCGCAACCGTGGGAATACGTTTGGAAGAGGAAAATGGTGATTCGGAGATCAGGAGAGGTA 846
| | | |||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 781 GAGGATCCGTCGGAATACGTTTGGAAGAGGAAGATAGTGATTCGGAGATCAGGAGAGGTA 840
Query 847 CTGATAGTCTTGAGCTT-aaaagaaaaagtgaaaaaggaagagaaaCTTTTGTTTTACAT 905
||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||
Sbjct 841 CTGATAGTCTTGAGCTTGAAAA-AAAAAGTGCAAAATGAAGAGAAACTTTTGTTTTACAT 899
Query 906 CTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGGAGATGAGAT 965
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 900 CTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGGAGATGAGAT 959
Query 966 GTTGAGTTTTGGTCGTGGGGTTACAGTACCTCTTGCTCTTAAAGATCTTGGGGATGGAAT 1025
||||| |||||||||||||||||||| | |||||||||| ||||||||| ||||| ||
Sbjct 960 GTTGATTTTTGGTCGTGGGGTTACAG--C-TCTTGCTCTTGAAGATCTTGATGATGGGAT 1016
Query 1026 CAAGAGTGATTCAATCTGTTTTGTTGACGAAGACGTTTGGCCAGATCATAAAGATCATGA 1085
|||||| ||||||||| ||| || | |||||| ||||||||||||||| |||| |||||
Sbjct 1017 AAAGAGTAATTCAATCTATTTCGTCGGCGAAGATGTTTGGCCAGATCATCAAGAACATGA 1076
Query 1086 TCACCGTGTTTCAAATTGCGGTGTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAA 1145
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 GCATCGTGTTTCAAATTGCGGTTTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAA 1136
Query 1146 GAAGATCTATTGTTTCATTAAT-AAAACTCACTGGTTTGTTCGGGGAGTTGCTTACTAG 1203
||| |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |||
Sbjct 1137 GAAAATCTATTGTTTCATTAATCAAAA-TCAGTGGTTTGTTGGGGGAGTTGCTTATTAG 1194
> AT2G04840.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1697009-1698240 FORWARD LENGTH=1170
Length=1170
Score = 656 bits (355), Expect = 0.0
Identities = 757/943 (80%), Gaps = 60/943 (6%)
Strand=Plus/Plus
Query 297 CTCCGGAAACTGGCTTCTGATGGTTGAGCTTCGTCTCAAATTCTATATTTAT-AA-CTTG 354
|||||||||||| || |||||||| || | |||||||||||||||||||| | || |||
Sbjct 252 CTCCGGAAACTGTCTCCTGATGGTCGATCGTCGTCTCAAATTCTATATTT-TGAACCTT- 309
Query 355 TTGACGAAGGA-AAGGATCGATCTTCCATCGATGGAGTCGCAAATACTTGGCGGGCAAGT 413
|||||| ||| || |||| |||||||||| || ||| | ||||| ||| || |||||
Sbjct 310 TTGACG-CGGACAACGATCAATCTTCCATCAAT---GTCACTAATACGTGGAGGACAAGT 365
Query 414 AAGGTTCAAACCTGGAAGA-GAA---T---AT--TTCCATGGATACTTGGTCGGGCCTTC 464
| || |||||| || | ||| | || || | ||||| ||| ||||||||||
Sbjct 366 ATTCTTTAAACCT-CAAAATGAATGGTCCAATGATT-C-TGGATGCTTCTTCGGGCCTTC 422
Query 465 TCGT-AGGGATAAAGTGCCGTTTGACTATGAAGCCGTTGAATGGGAGAAA-TCGTTAGCT 522
|||| | || ||| ||| | | ||||| ||| | ||||||| ||| ||| ||| |||||
Sbjct 423 TCGTAATGG-TAACGTGTCATATGACTTTGACTCTGTTGAAT-GGAAAAACTCGGTAGCT 480
Query 523 GTTCTGTGGGTAAACGACACAACAGGGGATTATGTCGTTGCTTGGACTTTTATACAAAAA 582
||||| ||| ||||||| |||||||| |||||||||||||||||||| || ||||| |
Sbjct 481 GTTCTATGGATAAACGAGACAACAGGAGATTATGTCGTTGCTTGGACATTCATACAGCAT 540
Query 583 TATTTGTTC-TCATACATGAAAGGAGA-TGGTTTTTGGCG-AGATTTGAATTC-TAATGG 638
|| |||||| || |||| | |||| | ||| | |||| | | || |||| || ||||||
Sbjct 541 TACTTGTTCTTC-TACAAGTCAGGATATTGG-TCTTGGTGTA-ATCTGAA-TCATAATGG 596
Query 639 AAAAAGTTTGGTTTTGTTTGATATGGCTTGTGAGGACAGTATGCTTTATCTGTTGACAAT 698
|||||||||||| ||||||||||||| |||||| ||| || ||||||||||| |||
Sbjct 597 GAAAAGTTTGGTTGTGTTTGATATGGCATGTGAGAACAATAAGCTTTATCTGTACACAGC 656
Query 699 TGATCATCACATCAAGATTTTCAATTTCTTTGGAG-ATAT--T-TTCACAGGAAAA-C-A 752
| ||||||| |||| |||||| |||||| ||||| ||| | | | | ||||| | |
Sbjct 657 TAATCATCATATCAGGATTTTTGATTTCTCTGGAGCTTATCCTATGGAAAAGAAAACCGA 716
Query 753 AAACCGGTATTGG-GGTCGTCCGTTTAACTTC-GTTGCGCAACCGTGGGAATACGTTTGG 810
||||| ||||||| | || ||||||| | |||| | ||||||||||||||||||||
Sbjct 717 AAACCCGTATTGGAAAT-ATCTGTTTAAC-GCGGTTGAGGAACCGTGGGAATACGTTTGG 774
Query 811 AAGAGGAAAATGGTGATTC-G-GA-GATCAGGAGAGGTACTGAT-AGTCTTGAG-CTTaa 865
||||||||||| | ||||| | | |||||| ||||| |||| | ||||||| |||
Sbjct 775 AAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTTTTGATCA-TCTTGAGCCTT-- 831
Query 866 aagaaaaagtgaaaaaggaag-aga-a-aCTTTTGTTTTACATCTTTAAGATGAATCTTG 922
| || ||||| | |||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 832 -A-AACAAGTGTTTTACGAAGCAGAGAGACTTTTGTTTTACATCTTTAAGATGAATCTTG 889
Query 923 AGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGGAGATGAGATGTTGAGTTTT-GGTCGT 981
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 890 AGAGTTTCAAGTGGGAAAGAGTTTATTCTCTTGGAGATGAGATGTTG-GTTTTTGGTCAA 948
Query 982 GGGGTTACAGTACCT-CTTGCTCTTAAAGATCTTGGGGATGGAATCAAGAGTGATTCAAT 1040
|| |||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 949 GGTGTTACAATACCTACT-GCTCTTAAAGATCTTGGTGATGGAATCAAGAGTGATTCAAT 1007
Query 1041 CTGTTTTGTTGACGAAGACGTTTGGCCAGATCATAAAGATCATGATCACCGTGTTTCAAA 1100
|| ||| || || ||||||| |||||||||||| |||||||||||| |||||||| ||
Sbjct 1008 CTATTTCGTCGATAAAGACGTCTGGCCAGATCATCAAGATCATGATCGTCGTGTTTCGAA 1067
Query 1101 TTGCGGTGTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAGATCTATTGTTT 1160
||||||||||||| |||||||||||||||||||| ||||||||| ||| | ||| |||
Sbjct 1068 TTGCGGTGTCTTCAATATTGCCACAAGTAAGATCAAATGGCCTACGAAAAAATATCGTTC 1127
Query 1161 CATTAATAAAACTCACTGGTTTGTTCGGGGAGTTGCTTACTAG 1203
| | ||| ||||||| |||||||| | ||||||||||| |||
Sbjct 1128 CGTAAATGAAACTCAGTGGTTTGTGCTCGGAGTTGCTTATTAG 1170
> AT2G04830.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1695355-1695856 FORWARD LENGTH=502
Length=502
Score = 468 bits (253), Expect = 6e-131
Identities = 343/384 (89%), Gaps = 15/384 (4%)
Strand=Plus/Plus
Query 837 AGGAGAGGTACTGATAGTCTTGAGCTTaaaagaaaaagtgaaaaaggaagagaaaCTTTT 896
|||||| ||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 1 AGGAGAAGTACTTATAGTCTTGAGCTTAAAGGAAATAGTGAAAAATGAAGAGAAACTTTT 60
Query 897 GTTTTACATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGG 956
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 61 GTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAAGAGTTTACTCTATTGG 120
Query 957 AGATGAGATGTTGAGTTTTGGTCGTGGGGTTACAGTACCTCTTGCTCTTAAAGATCTTGG 1016
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AGATGAGATGTTGATTTTTGGTCGTGGGGTTACAGTACCTCTCGCTCTTAAAGATCTTGG 180
Query 1017 GGATGGAATCAAGAGTGATTCAATCTGTTTTGTTGACGA--A-GACGTTTGGCCAGATCA 1073
| |||||||||||||||||||||| ||| || ||||| | || ||||||||||||||
Sbjct 181 TCACGGAATCAAGAGTGATTCAATCTATTTCGTCGACGACGAAGATGTTTGGCCAGATCA 240
Query 1074 TAAAGAT---C-A--TGATCAC---CGTGTTTCAAATTGCGGTGTCTTCGATATTGCCAC 1124
||||||| | | | || | | ||| || ||||||||||||||||||||||||||
Sbjct 241 TAAAGATTGGCCAGATTATAAAGATCATGTATCGAATTGCGGTGTCTTCGATATTGCCAC 300
Query 1125 AAGTAAGATCGAATGGCCTAAGAAGATCTATTGTTTCA-TTAATAAAACTCACTGGTTTG 1183
|||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 301 AAGTAAGATCGAATGGCCTAAGAAGATCTATT-TTTCCGTTAATAAAACTCAGTGGTTTG 359
Query 1184 TTCGGGGAGTTGCTTACTAG-GAG 1206
|| ||||||||||||| ||| |||
Sbjct 360 TTTGGGGAGTTGCTTATTAGAGAG 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5