BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930812
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04890.1 | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720361... 2030 0.0
> AT2G04890.1 | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720361-1722604
REVERSE LENGTH=1863
Length=1863
Score = 2030 bits (1099), Expect = 0.0
Identities = 1197/1246 (96%), Gaps = 0/1246 (0%)
Strand=Plus/Plus
Query 69 CAATAATGTTGAAGCCATTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATG 128
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CAATAATGTTGCAGCCACTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATG 486
Query 129 AACTCTCCATGTGGCCTGAAGAGGCTAATGATTTGTTGTTGATAGTGGAGGCAATATCAA 188
||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 487 AACTCTCCATGTGGCCTGATGATGCTAAAGATTTGTTATTGATAGTGGAGGCAATATCAA 546
Query 189 GGGGAGACTTGAAATTGGTACTGGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTC 248
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 547 GGGGAGACTTGAAGTTGGTACTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTC 606
Query 249 TGATGGCACGATGGTGTATGGGAGAGTTACGCGGTATGGTTTCGATTTCTGGTGAGCCAA 308
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 607 TAATGGCACGATGGTGTATGGGTGAGTTGCGCGGTATGGTTTCGATTTCTGGTGAGCCAA 666
Query 309 TCCAGAGATTGGGAGCTTACATGTTAGAAGGGCTTGTGGCAAGGCTTGCTGCCTCTGGTA 368
||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||
Sbjct 667 TCCAGAGATTGGGAGCTTATATGTTAGAAGGGCTTGTTGCTAGGCTTGCTGCTTCTGGTA 726
Query 369 GTTCGATATACAAGTCTCTTCAATCCAGAGAACCGGAGAGTTATGAATTTTTATCTTATG 428
|||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 727 GTTCGATATATAAGTCTCTCCAGTCCAGAGAACCAGAGAGTTATGAATTTTTATCTTATG 786
Query 429 TGTATGTTCTGCATGAGGTTTGCCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTG 488
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 787 TGTATGTTCTGCATGAGGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTG 846
Query 489 CGATCGCAGAAGCAATGAAGGATGAAGAGAGAATCCACATTATTGACTTCCAAATTGGGC 548
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 847 CGATTGCAGAAGCAATGAAGGATGAAGAGAGGATTCACATTATTGACTTCCAAATTGGAC 906
Query 549 AAGGGAGCCAGTGGATTTCACTGATTCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAA 608
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 907 AAGGGAGCCAGTGGATAGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAA 966
Query 609 ATATTCGAATTACCGGAGTCGGTGATGTATCCGTCTTGGTTACAGTCAAGAAAAGATTAG 668
||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||| |||
Sbjct 967 ATATTCGAATTACCGGAGTTGGTGATGGATCTGTCTTGGTTACAGTCAAGAAGAGACTAG 1026
Query 669 AGAAACTTGCAAAGAAGTTTGATGTCCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTT 728
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1027 AGAAACTTGCAAAGAAGTTTGATGTTCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTT 1086
Query 729 GTGAAGTTGAAGTGGAAAATCTTGATGTCCGAGAAGGCGAAGCCCTTGGAGTGAACTTTG 788
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1087 GTGAAGTTGAAGTGGAAAATCTTGATGTCCGAGATGGCGAAGCCCTTGGAGTGAACTTTG 1146
Query 789 CTTACATGCTGCACCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGT 848
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CTTACATGCTGCATCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGT 1206
Query 849 TGTTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCA 908
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TGCTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCA 1266
Query 909 ACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACATTAAGTTATTACACAGCAA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1267 ACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACATTAAGTTATTACACGGCAA 1326
Query 969 TGTTTGAATCTATCGATGTGATGCTTCCGAGAAACCACAAGGAAAGGATCAATATCGAGC 1028
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1327 TGTTCGAATCTATCGATGTTATGCTTCCGAGAAATCACAAGGAAAGGATCAATATCGAGC 1386
Query 1029 AGCACTGCTTGGCAAGGGATGTCGTCAACATCATAGCTTGTGAAGGAGCTGAGAGGATTG 1088
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1387 AGCACTGCATGGCAAGGGATGTCGTCAACATCATAGCTTGTGAAGGAGCCGAGAGGATCG 1446
Query 1089 AAAGACACGAGCTTCTCGGAAAATGGAAGTCAAGGTTTTCCATGGCAGGTTTTGAGCCAT 1148
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1447 AAAGACACGAGCTTCTCGGGAAATGGAAGTCAAGGTTTTCCATGGCGGGTTTTGAGCCAT 1506
Query 1149 ACCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 ACCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACG 1566
Query 1209 GGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGTTGGATGGACAGAATCTTGG 1268
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1567 GGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGTTGGATGGACCGAATCTTGG 1626
Query 1269 TCTCATCTTGTGCATGGAAGTGAAAGAATAAATGTCTCCGAGAATG 1314
|||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1627 TCTCATCTTGTGCATGGAAGTGAAAGAATAAACGTCTCCAAGAATG 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5