BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930813
Length=430
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 713 0.0
AT2G04890.1 | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720361... 187 7e-47
> AT2G04900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423
(InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins
in 878 species: Archae - 0; Bacteria - 1498; Metazoa -
118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes
- 136 (source: NCBI BLink). | chr2:1722481-1723831 FORWARD LENGTH=631
Length=631
Score = 713 bits (386), Expect = 0.0
Identities = 413/426 (97%), Gaps = 2/426 (0%)
Strand=Plus/Plus
Query 6 CTTAAAGTCTCTGGTCAAATGGGAAATTGTGTAAGAAGCAATCTAAGAGACATCAGAGGA 65
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 CTTAAAGTCTCTGGTCAAATGGGAAATAGTGTAAGAAGCAATCTAAGAGACATCAGAGGA 61
Query 66 AGACGATCGATGGATCCTCGGATATGGCACAAAGTCGCAGCTATTTCCGGTATGGCTGCT 125
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 62 CGACGATCGATGGATCCTCGGATGTGGCACAAAGTCGCCGCTATTTCCGGTATGGCTGCT 121
Query 126 CTTGGTTTGGGAACTTATGGCGCTCATGTCTTTAAACCAGAAAACCCTTCTTACAAACAG 185
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 122 CTTGGTTTGGGAACTTATGGTGCTCATGTCTTTAAACCAGAGAACCCTTCTTACAAACAG 181
Query 186 GTGTGGCAAACGGCTTCTCTTTACCATTTGGTTCACACTGCTGCTCTTGTTTCTGCTCCT 245
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTGTGGCAAACGGCTTCACTTTACCATTTGGTTCACACTGCTGCTCTTGTTTCTGCTCCT 241
Query 246 AGCACCAAATATCCCAACATTTTTGGTGGCTTGTTGACTGCTGGGATTGTAGCCTTTTCC 305
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 242 AGCACCAAATATCCCAACATTTTTGGTGGCTTGTTGACTGCTGGAATTGTAGCCTTTTCC 301
Query 306 GGCACGTGTTATATGGTAGCGCTGCGTGAGGACAGAAAGTTTTCTACCTTGGCACCATTC 365
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 302 GGCACGTGTTATATGGTAGCGCTGCGGGAGGACAGAAAGTTTTCGACATTGGCACCATTC 361
Query 366 GGAGGCTTTGCGTTCATTGCTGCATGGGCAACTTTACTTTTCTAAACAATCTCA-AGACC 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 362 GGAGGCTTTGCGTTCATTGCTGCATGGGCAACTTTACTTTTCTAAACAATCTCATA-ACC 420
Query 425 ATCTAT 430
||||||
Sbjct 421 ATCTAT 426
> AT2G04890.1 | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720361-1722604
REVERSE LENGTH=1863
Length=1863
Score = 187 bits (101), Expect = 7e-47
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 1 TCTCTCTTAAAGTCTCTGGTCAAATGGGAAATTGTGTAAGAAGCAATCTAAGAGACATCA 60
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 128 TCTCGCTTAAAGTCTCTGGTCAAATGGGAAATAGTGTAAGAAGCAATCTAAGAGACATCA 69
Query 61 GAGGAAGACGATCGATGGATCCTCGGATATGGCACAAAGTCGCAGCTATTTCCGGT 116
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 68 GAGGACGACGATCGATGGATCCTCGGATGTGGCACAAAGTCGCCGCTATTTCCGGT 13
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20408706094
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5