BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930814

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04910.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   459    1e-128


> AT2G04910.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr2:1723980-1724354 REVERSE LENGTH=375
Length=375

 Score =  459 bits (248),  Expect = 1e-128
 Identities = 320/355 (90%), Gaps = 4/355 (1%)
 Strand=Plus/Plus

Query  55   CGAAAGCGGAATTCGGACAATGGTGTGTAGCTGATCCACAGATACCAGATAATGTGATAC  114
            |||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||
Sbjct  23   CGAAAGCGGAGTTCGGACAATGGTGTGTAGCCGATGGACAGATACCAGATAATGTGATAC  82

Query  115  AAGCAGCCTTAGACTGGGCTTGTCAAATAGGCGGAGCAGATTGCAGTAAGATTCAGCCTG  174
            |||||||| |||||||||||||||||| ||| |||||||| ||||||| |||||||||| 
Sbjct  83   AAGCAGCCGTAGACTGGGCTTGTCAAACAGGTGGAGCAGACTGCAGTACGATTCAGCCTA  142

Query  175  ACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATGATT  234
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  143  ACCAGCCTTGCTTCTTGCCCAACACTGTCAAGGACCATGCCTCTGTTGTCTTCAATAACT  202

Query  235  ATTATCAGCGTTATAAGCACAAGGGCGGTACCTGTGACTTCCACAGCGCTGCAGTAATCA  294
            |||| ||||||||||||| ||| |||||| ||||| ||||| ||||| ||||| | ||||
Sbjct  203  ATTACCAGCGTTATAAGCGCAACGGCGGTTCCTGTAACTTCAACAGCACTGCATTTATCA  262

Query  295  CGCAG-CGCGACCCTAGTAAGCAAATTTATATCAACCCTTTT-GTTAACAGCTATTTAAG  352
            | ||  | |||||||||||||||| ||||| | ||||||||| |||| ||| ||||||||
Sbjct  263  CACAAAC-CGACCCTAGTAAGCAACTTTATCTAAACCCTTTTTGTTA-CAGTTATTTAAG  320

Query  353  CTCTTTGATCAATCAAGATCTTGAACCATTTGTGACTGATTATCTCATGATTTGA  407
            |||||||||||||||| |||||||||||| |||  ||||||||||||||||||||
Sbjct  321  CTCTTTGATCAATCAAAATCTTGAACCATCTGTTTCTGATTATCTCATGATTTGA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5