BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930816
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04920.1 | Symbols: | F-box and associated interaction doma... 575 2e-163
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 113 2e-24
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 87.9 1e-16
AT3G49980.1 | Symbols: | F-box and associated interaction doma... 87.9 1e-16
AT3G20690.1 | Symbols: | F-box and associated interaction doma... 69.4 5e-11
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 62.1 9e-09
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 62.1 9e-09
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 60.2 3e-08
> AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:1726138-1727268 FORWARD LENGTH=1131
Length=1131
Score = 575 bits (311), Expect = 2e-163
Identities = 486/567 (86%), Gaps = 26/567 (5%)
Strand=Plus/Plus
Query 273 CTCTCAACTACTACCTCTTAGAATCAGAGAATGGTGTGTCTTTGAAGGGAAATACTTACT 332
|||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||| |
Sbjct 569 CTCTCAACTACTTTCTCATAGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATT 628
Query 333 GGTTTGCTTTAGATGATGACACAAGTTTCTTACTCGGTTTTGATTTTACAACAGAGAGAT 392
|| ||||||||||||| || |||| |||||||||||||||||||||||||| |||||||
Sbjct 629 GGCTTGCTTTAGATGAAGAAACAAATTTCTTACTCGGTTTTGATTTTACAATGGAGAGAT 688
Query 393 TTAACCGTTTTTCTCTTCCCTCAACTGAGAATTTG-GATATGATGGTTTTATCGGTTTTT 451
|||| ||||| | ||||||||||| | |||| ||| |||| ||||||| |||||||| ||
Sbjct 689 TTAAACGTTTGTGTCTTCCCTCAAATAAGAA-TTGTGATACGATGGTTCTATCGGTTGTT 747
Query 452 AGAGAAGAAAAACTCTCAATGTCACATGAAAAATTTTGTACATCAAAGATGGATATTTGG 511
|||||||||||||||||| | |||||| | || |||||| ||||||||||||||||||||
Sbjct 748 AGAGAAGAAAAACTCTCAGTATCACATCAGAACTTTTGTTCATCAAAGATGGATATTTGG 807
Query 512 AT-ACCCAATAGAATTGATAGTGAAGCCGCCTTGTCCTGGAAAAAATCCTTTTCTATAGA 570
|| | |||||||||||||||||||| ||||| |||||||||| | | ||||||| | ||
Sbjct 808 ATGA-CCAATAGAATTGATAGTGAAACCGCCATGTCCTGGAAGAGGTACTTTTCTGTGGA 866
Query 571 GTTTAAAATCCTTAGTATTTGTCATTATTTTCCGTTTTGCAATAGTTTTATGATCGATAA 630
|||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||| |
Sbjct 867 GTTTAAAATCCTTAGTATGTGTCATTCTTTACCGTTTTGCAATAGTTTTCTGATCGATGA 926
Query 631 GGAGAAGAAAGTGGTCGTGTGTACTGCGACTACTCTTGTAA-GGG--ATAAGAACATGGT 687
||| |||||| | | || || | || | | ||||| ||| || ||||||||||
Sbjct 927 GGAAAAGAAAAT--T-GT-CATA-T-CG---A--C-TGTAAGGGGTAATGAGAACATGGT 974
Query 688 AAGCATTATTGGAGAGGACAATGCGTATTACACAGAAATCCCTGTGGAATCTACAAATTG 747
|| ||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 975 AAACATTATTGGAGCGTACAATGCGTATTATGCAGAAGTCCCTGTGGAATCTACAAATTG 1034
Query 748 TTCATGTAGTCCATATATTT-TCAATTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 806
|||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1035 GCCATGTAGTCCATAT-TTTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 1093
Query 807 GA-GACAAA-ATAGAAGAATAAAACTA 831
| | |||| | | || ||||||||||
Sbjct 1094 AAAG-CAAAGA-A-AATAATAAAACTA 1117
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 113 bits (61), Expect = 2e-24
Identities = 204/268 (76%), Gaps = 29/268 (11%)
Strand=Plus/Plus
Query 308 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCTT-TAGATGATGACACAA-G-TTTCTTA 364
|||||||| |||||||| ||||||||||||| || || || | | | || | ||||||
Sbjct 610 GTGTCTTTAAAGGGAAACACTTACTGGTTTGGTTCTA-AT-A--A-A-AAGGACTTCTTA 663
Query 365 C-TCGGTTTTGATTTTACAACAGAGAGATTTAACCGTTTTTCTCTTCC-CTCAACT-GAG 421
| | |||||||||||||||||||||||||||| | | || |||||| | || || |||
Sbjct 664 CGT-AGTTTTGATTTTACAACAGAGAGATTTAATCATATTGGTCTTCCGC-CATCTCGAG 721
Query 422 AATT-TGGATATGATGGTTTTATCGGTTTTTAGAGAAGAAAAACTCTCAATGTCACATGA 480
| | ||| | | |||| | |||| ||| || |||||||| |||||||| ||| ||| ||
Sbjct 722 A-TCATGGTTTT-ATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACAAGA 779
Query 481 AAAATTTTGTACATCAAAGATGGA--TATTTGGATACCCAATAGAA-TTGATAGTGAAGC 537
| || | |||||||||||||| |||||| | ||| |||| || ||| || |||||
Sbjct 780 GA--TTGAG-ACATCAAAGATGGAGATATTTGTA-ACC-AATA-AAGTTGGTACTGAAGA 833
Query 538 CGC--CTT-GTCCTGGAAAAAATCCTTT 562
|| ||| || |||| |||||||||
Sbjct 834 AGCTGCTTTGTTGTGGAGCAAATCCTTT 861
Score = 63.9 bits (34), Expect = 2e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 757 TCCATATATTTTCAATTATGTTCCAAGTTTGGTTCAAATC 796
||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1092 TCCATTTATTTACAATTATGTTCCAAGTTTGGTTCAAATC 1131
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 87.9 bits (47), Expect = 1e-16
Identities = 115/145 (79%), Gaps = 16/145 (11%)
Strand=Plus/Plus
Query 691 CATTATTGGAGAGGACAATGCG-TATTACACAGAAATCCC--T-GTGGAATC----TACA 742
|||||||||||||||||||| | || |||||||||||||| | || ||||| |||
Sbjct 978 CATTATTGGAGAGGACAATG-GATACTACACAGAAATCCCTTTAGTAGAATCTAGTTACC 1036
Query 743 AATTGTTCATG-TAGTCC-ATATATTTTCAATTATGTTCCAAGTTTGGTTCAAATCCAGC 800
|| || | | || ||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 1037 AAGTG-TGGGGATA-TCCAAT-TATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGG 1093
Query 801 AATGTAGA-GACAAAATAGAAGAAT 824
|| || || | || ||| ||||||
Sbjct 1094 AAGGTGGATG-CATTATAAAAGAAT 1117
> AT3G49980.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18530329-18531477 REVERSE LENGTH=1149
Length=1149
Score = 87.9 bits (47), Expect = 1e-16
Identities = 135/174 (78%), Gaps = 20/174 (11%)
Strand=Plus/Plus
Query 308 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCTT-TAGAT--GAT-GAC-A-CAAGTTTC 361
|||||||||||||||||||||||||||||||||| | ||| || ||| | || |||
Sbjct 610 GTGTCTTTGAAGGGAAATACTTACTGGTTTGCTTAT-GATTTGAAAGACGAGCA-GTTAG 667
Query 362 --TTACTCGGTTTTGATTTTACAACAGAGAGATTT-AACCGTTTTTCTCTTCCCT--CAA 416
||| || ||||||||| ||| |||||||||||| ||| || | | ||||||| ||
Sbjct 668 GGTTAATCAGTTTTGATTATACCACAGAGAGATTTGAAC-GTCTATGGCTTCCCTTTCAG 726
Query 417 CTGAGA-ATTTG-GAT-ATGATGGTT-T-TATCGGTTTTTAGAGAAGAAAAACT 465
|| || |||| ||| ||||| || | |||| ||| || |||||||||||||
Sbjct 727 -TGTGATATTTCTGATCATGATTATTCTCTATCAGTTGTTGGAGAAGAAAAACT 779
> AT3G20690.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7231570-7232682 REVERSE LENGTH=1113
Length=1113
Score = 69.4 bits (37), Expect = 5e-11
Identities = 78/97 (80%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 303 ATGGTGTGTCTTTGAAGGGAAATACTTACTGGTTTGCTTTAGAT-GATGA-CACAAG-TT 359
|||| |||||||||||||||||||||||||||| |||| |||| || || || ||| ||
Sbjct 608 ATGGCGTGTCTTTGAAGGGAAATACTTACTGGTATGCTAAAGATAGAAGATCAGAAGATT 667
Query 360 -TC-TT-ACTCGGTTTTGATTTTACAACAGAGAGATT 393
| || | | | ||||||||||| | |||||||||
Sbjct 668 GTTATTTAATATGCTTTGATTTTACTAGAGAGAGATT 704
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 62.1 bits (33), Expect = 9e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 767 TTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 799
|||||||||||||||||||||||||||||||||
Sbjct 1079 TTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 1111
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 62.1 bits (33), Expect = 9e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 306 GTGTGTCTTTGAAGGGAAATACTTACTGGTTTGCTTTAG 344
||||||||||||||||||||||||||||||| ||| |||
Sbjct 1817 GTGTGTCTTTGAAGGGAAATACTTACTGGTTGGCTATAG 1855
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 772 TTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTA 806
||||||||||||||||||||||||||||||| |||
Sbjct 1065 TTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5