BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930817
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 110 4e-23
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 108 1e-22
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 54.7 2e-06
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 110 bits (59), Expect = 4e-23
Identities = 332/452 (73%), Gaps = 66/452 (15%)
Strand=Plus/Plus
Query 609 GATTTTACAACAGAGAGATTTAAACGTGTGTATCTTCCGCCAAT-TGAGAATTTGGATTG 667
|||||||||||||| ||||||| ||| ||| |||||| || || | || || || |
Sbjct 670 GATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACC-ATCTCAGGATGTGTCTAA 728
Query 668 GAAGATTCTATCAATTGTTAGA-GAAGAAGAACTCTCAGTGTTAA-TACAGAAAGAG-TA 724
|| | ||||||| ||||| || ||| || |||||||| |||||| | | |||| | ||
Sbjct 729 GATGGCTCTATCAGTTGTTGGAGGAA-AACAACTCTCACTGTTAAGT-C--AAAGTGATA 784
Query 725 -TACATCAAAG---ATGGAGATTTGGGTGGCCAATAATATTGAAACTGAAGCCACCTTGT 780
|||||||||| |||||||| |||||| |||||| ||||| || || | | | ||
Sbjct 785 GTACATCAAAGATAATGGAGATGTGGGTGACCAATATTATTG-AA--GATG-TA-C-TG- 837
Query 781 CATG-GAAG-AAATCCTTTACTGTGGATATACGAATTCGCACTAATTCTCATAATTATAC 838
||| | || ||||| ||||| |||||||||| |||||| | | | | ||| | |
Sbjct 838 -ATGTGGAGCAAATCTTTTACCGTGGATATACCCATTCGCGGTGA---T--T-ATTGT-C 889
Query 839 AG--TTTGCCATAGCTT-TCTGA-TCGAGGAGGAGAAGAAAGTGGTC-GTGTGTTGTAAT 893
| |||| | || || ||| | |||| || || |||||||||| | ||||||| ||||
Sbjct 890 CGTATTTGAC-GAG-TTATCT-AGTCGACGAAGAAAAGAAAGTGG-CTGTGTGTTATAAT 945
Query 894 GAAAGGAATTAT--G---A-CATCATG--A-TAGACATTATTGGAGAGGACGAT-GACTA 943
| || |||| | | | || || | | || ||||||||||||||||| || || ||
Sbjct 946 G-AA--AATTTTGAGAAAAGCAACAAGAAAGTATACATTATTGGAGAGGACAATGGA-TA 1001
Query 944 TTACACA-AAATTCCCTTTTGTACAACCTAG-----ATGT-TGGCCGTGGTGTCC-ATGT 995
|||||| ||| ||||||| ||| || |||| | || ||| | | | ||| || |
Sbjct 1002 CTACACAGAAA-TCCCTTTAGTAGAATCTAGTTACCAAGTGTGG--G-GATATCCAAT-T 1056
Query 996 ATTTTCAATTATGTTCCAAGTTTGGTTCAAAT 1027
||||||||||||||||||||||||||||||||
Sbjct 1057 ATTTTCAATTATGTTCCAAGTTTGGTTCAAAT 1088
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 108 bits (58), Expect = 1e-22
Identities = 213/282 (76%), Gaps = 34/282 (12%)
Strand=Plus/Plus
Query 546 GTGTCTTTTAAGGGAAATACATATTGGGTTACTTTC-AATGAAAGAAGTA--TCTTGGC- 601
|||||||| |||||||| || || | |||| ||| ||| ||| ||| | |||| |
Sbjct 610 GTGTCTTTAAAGGGAAACACTTACT-GGTTTGGTTCTAAT-AAA-AAGGACTTCTT-ACG 665
Query 602 CAGTTTTGATTTTACAACAGAGAGATTTAAACGTGT-GTATCTTCCGCCAAT-T-GAGAA 658
||||||||||||||||||||||||||||| | | | | |||||||||| | | ||||
Sbjct 666 TAGTTTTGATTTTACAACAGAGAGATTTAATCATATTGG-TCTTCCGCCA-TCTCGAGA- 722
Query 659 TT-TGGATTGGAAGATTCTATCAATTGTTAGAGAAGAAGAACTCTCAGTGTTA-ATACAG 716
| ||| || | | ||||||| ||||| |||||||| |||||||||||||| | | ||
Sbjct 723 TCATGGTTTT-ATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTGTTACA-AGAG 780
Query 717 AAAGAGTATACATCAAAGATGGAGAT-TTGGGTGGCCAATAATA-TTGAAACTGAAGCCA 774
| ||| | |||||||||||||||| || | | ||||||| | ||| ||||||| |
Sbjct 781 ATTGAG-A--CATCAAAGATGGAGATATTTG-TAACCAATAA-AGTTGGTACTGAAGA-A 834
Query 775 -C--CTT-GTCATGGAAG-AAATCCTTTACT-GTGGATATAC 810
| ||| || |||| | |||||||||| | |||||| |||
Sbjct 835 GCTGCTTTGTTGTGGA-GCAAATCCTTTA-TAGTGGATTTAC 874
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 999 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1027
|||||||||||||||||||||||||||||
Sbjct 1079 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5