BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930823
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 580 6e-165
AT2G18680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 531 6e-150
AT2G18670.1 | Symbols: | RING/U-box superfamily protein | chr2... 531 6e-150
> AT2G18690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF975 (InterPro:IPR010380);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in
20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0;
Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:8097420-8098827 FORWARD LENGTH=1408
Length=1408
Score = 580 bits (314), Expect = 6e-165
Identities = 594/726 (82%), Gaps = 32/726 (4%)
Strand=Plus/Plus
Query 180 TTTGTGGGTTTTTCATACATCTTCATGGCAGTATTCC-CCATTATTAACCTCTATTCTGA 238
|||||||||| ||||||||| ||| ||| || ||| |||| || ||||||| |||||
Sbjct 501 TTTGTGGGTTCTTCATACATTTTCGCGGCTGT-CTCCTCCATCATCAACCTCTTTTCTGT 559
Query 239 TCTAGTCACCGTTCACGCATCAGCTCTTACTCTGAAAAATGAAAACATCAAGATCAAATA 298
|||||||| ||| |||||||| ||| ||||||| ||| |||||||| |||| |||||| |
Sbjct 560 TCTAGTCATCGTCCACGCATCGGCTATTACTCTTAAAGATGAAAACTTCAATATCAAAGA 619
Query 299 TTTTCCGGTTATGA-CCTTTAAATCTTGGAAGGGACCTCTTGTGACAAAATTCTATATTG 357
|||||| ||| ||| || ||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 620 TTTTCCTGTTCTGAGCC-TTAAATCTTGGAAGGGACCTCTTGTGACATATTTCTACATTG 678
Query 358 CTCTTTTCATTCTTGGCTATGGGTTCCTATACGCTATAATTTTTTGTCCTCT-C-TTAG- 414
||||||||| |||||||| ||| ||||| | | |||||| |||||||| | | || |
Sbjct 679 CTCTTTTCAGTCTTGGCTTTGGCTTCCTCTTCTTTATAATCCTTTGTCCTATCCTTTTGT 738
Query 415 TGT-T-T----T-C--TT-C----AAAACt-t-tttttCTTGGTAGCCAAGTCTGTTCCT 458
| | | | | | || | |||| | | |||||||| | | || ||| | |
Sbjct 739 TCTCTATAAAATCCGGTTCCGTGGAAAA-TATCGGTTTCTTGGCGGTCGAGGCTGGTGTT 797
Query 459 TTATTGATTCTATTGGA-AGTCTATGAGTCCTATTTAGCTATCGT-TTGGAACTTATCTA 516
||||||||| |||| | |||| | |||||||||| |||||| | ||||||||||||||
Sbjct 798 TTATTGATTATATT-CACCGTCTCTCAGTCCTATTTTGCTATC-TATTGGAACTTATCTA 855
Query 517 TGGTCATATCGATACTAGAGGAAACTTATGGGATCAAAGCTTTAAGGAAAGCTGCAAAGA 576
|||||||||||||||||||||||| ||||||| || ||||||| ||||||| |||||||
Sbjct 856 TGGTCATATCGATACTAGAGGAAAGTTATGGGTTCCAAGCTTTGGGGAAAGCAGCAAAGA 915
Query 577 TTGCTAAAGGGATGAAGCCAAAAATATTTCTCTTGAATCTTTCCTTCCATTTATTGACAT 636
||| ||||||||||||| ||||| | |||||||||||||||| ||| ||||||| |||
Sbjct 916 TTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTTCTTTGGTTTATTGGCAT 975
Query 637 TCGGATTAGGTCAAATCTTGCAGCTGATAAAT-TGGAGAAGATCTTTCTCGGTTACCTTA 695
|||||||| |||||||||||||||||| ||| ||| ||||||| || |||||||||||
Sbjct 976 CCGGATTAGCTCAAATCTTGCAGCTGATCAATATGG-GAAGATCGTTAGCGGTTACCTTA 1034
Query 696 GCCATTGGTTTAGTCTTTGTGTGTTTGGAATTTGCGCTGATCATGTTTCAGCTTGTGACT 755
||| ||||| ||| |||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 1035 ACCACAGGTTTTGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGATGTTTCAGCTTGTGACT 1094
Query 756 TACACCGTTTTC-TATTTCCAATGTAAGAGCCTCCAAAGCAAAGATGTTGAGTCGCTCGG 814
||||||||| | |||||||||||||| ||||||||| ||| ||| |||||||||||| |
Sbjct 1095 TACACCGTTG-CATATTTCCAATGTAAAAGCCTCCAAGGCAGAGACGTTGAGTCGCTCAG 1153
Query 815 GGATGTGGAATATACGAAATTGTCCTCCAATACTGTCATGGGATGATTGGCATGATATTC 874
|||||||||||||| | |||||| |||| |||| ||| || ||||||| | |||||||
Sbjct 1154 GGATGTGGAATATATGGCATTGTCTTCCACTACTCTCACGGAATGATTGCCTTGATATTT 1213
Query 875 CAAGAG 880
||||||
Sbjct 1214 CAAGAG 1219
> AT2G18680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte,
pollen tube; EXPRESSED DURING: L mature pollen stage,
M germinated pollen stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G18690.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr2:8094780-8095779 FORWARD LENGTH=1000
Length=1000
Score = 531 bits (287), Expect = 6e-150
Identities = 562/692 (81%), Gaps = 29/692 (4%)
Strand=Plus/Plus
Query 190 TTTCATACATCTTCATGGCAGTATTCC-CCATTATTAACC-TCTATTCTGA-TCTAGTCA 246
||| |||||||||||| || || ||| |||| || |||| | || || | ||| ||||
Sbjct 192 TTT-ATACATCTTCATCGCCGT-CTCCTCCATCATCAACCTTTTA-TC-CACTCTTGTCA 247
Query 247 CCGTTCACGCATCAGCTCTTACTC-TGAAAAATGAAAACATCAAGATCAAATATTTTCCG 305
||||| ||||| |||||||||| | ||| |||| | | || |||||||| ||||||||
Sbjct 248 TGGTTCATGCATCGGCTCTTACTCAT-AAAGATGATAGCTTCGAGATCAAAGATTTTCCG 306
Query 306 GTTATGAC-CTTTAAATCTTGGAAGGGACCTCTTGTGACAAAATTCTATATTGCTCTTTT 364
|| |||| | |||||| ||||||||||||||||||||| || |||||||||| ||| ||
Sbjct 307 ATTCTGACGC-TTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTTCTCTT 365
Query 365 CATTCTTGGCTATGGGTTCCTATACGCTATAAT--TTTTTGTCCTCTC-TTAGTGTTTTC 421
|| |||||||||| ||||||||| | |||| | | ||| | || || || | || ||
Sbjct 366 CAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTT-T-CTATCGTT-TTCTTCTC 422
Query 422 TTCAAAACtttttttCTTGGTAGCCAAGTCTGTTC-CTTTATTGATTCTATTGGAAGTCT 480
| ||||||| || ||||| |||||| ||| | ||||||| ||| |||| | |||||
Sbjct 423 TACAAAACTCGATTCCTTGGCAGCCAAATCT-CGCGCTTTATTCATTGTATTTGCAGTCT 481
Query 481 ATGAGTCCTATTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTAGAGGAAA 540
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 482 TTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGATA 541
Query 541 CTTATGGGATCAAAGCTTTAAGGAAAGCTGCAAAGATTGCTAAAGGGATGAAGCCAAAAA 600
||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 542 CTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAAC 601
Query 601 TATTTCTCTTGAATCTTTCCTTCCATTTATTGACATTCGGATTAGGTCAAATCTTGCAGC 660
|||| ||||||||||||| ||| |||||| |||| ||||||| ||||||||||| ||
Sbjct 602 TATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGGC 661
Query 661 TGATAAATTGGAGAAGATCTTTCTCGGTTACCTTAGCCATTGGTTTAGTCTTTGTGTGTT 720
|| | ||||||| || || ||||||||||||||| ||| ||||| ||| || || |||
Sbjct 662 TGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGTT 721
Query 721 TGGAATTTGCGCTGATCATGTTTCAGCTTGTGACTTACACCGTTTTCT-ATTTCCAATGT 779
|| |||| | ||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 722 CGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTG-CTTATTTCCAATGT 780
Query 780 AAGAGCCTCCAAAGCAAAGATGTTGAGTCGCTCG-GGGATGTGGAATATACGAAATTGTC 838
|||||||| ||| | | | | | | ||||| | ||||||| |||||||||||||||||
Sbjct 781 AAGAGCCTGCAAGG-ACA-A-G---ACTCGCT-GAGGGATGTTGAATATACGAAATTGTC 833
Query 839 CTCCAATACTGTCATGGGATGATTGGCATGAT 870
|||| |||| |||||||| ||||| | ||||
Sbjct 834 ATCCACTACTCTCATGGGAGGATTGCCTTGAT 865
> AT2G18670.1 | Symbols: | RING/U-box superfamily protein | chr2:8093220-8095729
FORWARD LENGTH=2072
Length=2072
Score = 531 bits (287), Expect = 6e-150
Identities = 562/692 (81%), Gaps = 29/692 (4%)
Strand=Plus/Plus
Query 190 TTTCATACATCTTCATGGCAGTATTCC-CCATTATTAACC-TCTATTCTGA-TCTAGTCA 246
||| |||||||||||| || || ||| |||| || |||| | || || | ||| ||||
Sbjct 1314 TTT-ATACATCTTCATCGCCGT-CTCCTCCATCATCAACCTTTTA-TC-CACTCTTGTCA 1369
Query 247 CCGTTCACGCATCAGCTCTTACTC-TGAAAAATGAAAACATCAAGATCAAATATTTTCCG 305
||||| ||||| |||||||||| | ||| |||| | | || |||||||| ||||||||
Sbjct 1370 TGGTTCATGCATCGGCTCTTACTCAT-AAAGATGATAGCTTCGAGATCAAAGATTTTCCG 1428
Query 306 GTTATGAC-CTTTAAATCTTGGAAGGGACCTCTTGTGACAAAATTCTATATTGCTCTTTT 364
|| |||| | |||||| ||||||||||||||||||||| || |||||||||| ||| ||
Sbjct 1429 ATTCTGACGC-TTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTTCTCTT 1487
Query 365 CATTCTTGGCTATGGGTTCCTATACGCTATAAT--TTTTTGTCCTCTC-TTAGTGTTTTC 421
|| |||||||||| ||||||||| | |||| | | ||| | || || || | || ||
Sbjct 1488 CAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTT-T-CTATCGTT-TTCTTCTC 1544
Query 422 TTCAAAACtttttttCTTGGTAGCCAAGTCTGTTC-CTTTATTGATTCTATTGGAAGTCT 480
| ||||||| || ||||| |||||| ||| | ||||||| ||| |||| | |||||
Sbjct 1545 TACAAAACTCGATTCCTTGGCAGCCAAATCT-CGCGCTTTATTCATTGTATTTGCAGTCT 1603
Query 481 ATGAGTCCTATTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTAGAGGAAA 540
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1604 TTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGATA 1663
Query 541 CTTATGGGATCAAAGCTTTAAGGAAAGCTGCAAAGATTGCTAAAGGGATGAAGCCAAAAA 600
||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1664 CTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAAC 1723
Query 601 TATTTCTCTTGAATCTTTCCTTCCATTTATTGACATTCGGATTAGGTCAAATCTTGCAGC 660
|||| ||||||||||||| ||| |||||| |||| ||||||| ||||||||||| ||
Sbjct 1724 TATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGGC 1783
Query 661 TGATAAATTGGAGAAGATCTTTCTCGGTTACCTTAGCCATTGGTTTAGTCTTTGTGTGTT 720
|| | ||||||| || || ||||||||||||||| ||| ||||| ||| || || |||
Sbjct 1784 TGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGTT 1843
Query 721 TGGAATTTGCGCTGATCATGTTTCAGCTTGTGACTTACACCGTTTTCT-ATTTCCAATGT 779
|| |||| | ||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 1844 CGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTG-CTTATTTCCAATGT 1902
Query 780 AAGAGCCTCCAAAGCAAAGATGTTGAGTCGCTCG-GGGATGTGGAATATACGAAATTGTC 838
|||||||| ||| | | | | | | ||||| | ||||||| |||||||||||||||||
Sbjct 1903 AAGAGCCTGCAAGG-ACA-A-G---ACTCGCT-GAGGGATGTTGAATATACGAAATTGTC 1955
Query 839 CTCCAATACTGTCATGGGATGATTGGCATGAT 870
|||| |||| |||||||| ||||| | ||||
Sbjct 1956 ATCCACTACTCTCATGGGAGGATTGCCTTGAT 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42950195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5