BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930828
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22720.1 | Symbols: | F-box and associated interaction doma... 191 1e-47
> AT3G22720.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8028961-8030097 REVERSE LENGTH=1137
Length=1137
Score = 191 bits (103), Expect = 1e-47
Identities = 336/443 (76%), Gaps = 37/443 (8%)
Strand=Plus/Plus
Query 29 ATGTCTGATCTTCCGGTGGATTT-GT-TAGAAGATATTTTCAATA-GACTCCCGACCACG 85
||||| |||||||| | ||||| || |||| ||| | || || | ||||| ||||
Sbjct 1 ATGTCGGATCTTCCTTTAGATTTGGTAGAGAAAATACTCTC--TAGGGTTCCCG-CCACA 57
Query 86 TCTCTGAAAGGACTACGATCCACTTGCAAACTATGGAACGGTTTAAT-AAA-A-AGAA-A 141
||||| ||| |||||||||| ||||| | || |||||||| |||| | ||| | ||| |
Sbjct 58 TCTCTCAAACGACTACGATCGACTTGTAGACGATGGAACGCTTTATTGAAAGACCGAAGA 117
Query 142 --C-CC----AAGA-TTTC-TCGAAGCTGCAAAGAAGCCTCT-G-GTTCTCATTTTGAGG 190
| || || | |||| | |||| ||||| || ||| | |||||||| ||||
Sbjct 118 TTCACCGAGAAACACTTTCAT-AAAGCACCAAAGGAG--TCTAGAGTTCTCATGTTGAAA 174
Query 191 GATTATAGGGTTTGGCGAATGAGCGTCAATCACGACGTCGCTGCTCCATCTAAAGAATTT 250
|| |||||||||| | ||| |||||||||| | | || || |||||||| ||| |||
Sbjct 175 GAGTATAGGGTTTTTCCAATAAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACTTT 234
Query 251 GATGGTGCACTTAGCCTAATGGATCCACATTTTAAGTCACAACAAGTCGAT-ATAGCTGG 309
| ||||||||| | | || ||| |||| ||| ||| ||||||||| | ||| | |
Sbjct 235 AAAGGTGCACTT-G-GTTAT---TCC-CATTCTAATTCAGAACAAGTCG-TGATAACCGA 287
Query 310 CGTTTTTCACTGCGACGGTTTGTTGTTATGCACCACCGAGGACGATAGACTCGTGGTTTG 369
|||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 288 AGTTTTTCACTGCGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGGTTTG 347
Query 370 GAATCCGTATTTAGAGGAAACCAGGTGGATCCAACACAAAACTGATCACAAGAGAGAC-T 428
|||||||| ||| | |||||||| |||||||||| |||| |||| || |||| || |
Sbjct 348 GAATCCGTGTTTGGGGGAAACCAAATGGATCCAACTCAAAGTTGATTACCGGAGATACGT 407
Query 429 CT--A-AGTTAGCTCTAGGATAT 448
|| | | || |||||||| |||
Sbjct 408 CTCCATATTT-GCTCTAGGGTAT 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5