BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930834
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light ha... 1382 0.0
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light ha... 1325 0.0
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II... 839 0.0
> AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823240-1824425 REVERSE LENGTH=1101
Length=1101
Score = 1382 bits (748), Expect = 0.0
Identities = 823/860 (96%), Gaps = 2/860 (0%)
Strand=Plus/Plus
Query 1 TCCTTTCATTGTAGTTTAA-GAAAAGATTACGATAATGGCTACATCAGCTATCCAGCAAT 59
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TCCTTTCATTGTAG-TTAACGAAAAGATTACGATAATGGCAACATCAGCTATCCAGCAAT 119
Query 60 CCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTCCAACGACCTCCTCCGCAAGGTTGGTG 119
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 120 CCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCCAACGAACTCCTCCGCAAGGTTGGTG 179
Query 120 TTTCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATCT 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATCT 239
Query 180 GGTATGGACCAGACCGTCCCAAATACTTGGGACCATTCTCGGAGAACACACCATCGTACT 239
|||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||
Sbjct 240 GGTACGGACCAGACCGTCCCAAGTACTTAGGACCATTCTCGGAGAATACACCGTCCTACC 299
Query 240 TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCAGCTGACCCGG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCGGCTGACCCGG 359
Query 300 AGACATTCGCTAAGAACCGTGAGCTTGAGGTAATCCACAGCAGATGGGCTATGTTGGGTG 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 AGACATTCGCTAAGAACCGTGAGCTTGAAGTAATCCACAGCAGATGGGCTATGTTGGGTG 419
Query 360 CTCTTGGCTGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCCG 419
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCTCGGATGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCCG 479
Query 420 TGTGGTTCAAGGCGGGTTCTCAGATCTTCTCAGAAGGAGGTCTTGATTACCTCGGAAACC 479
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TGTGGTTCAAGGCAGGTTCTCAGATTTTCTCAGAAGGAGGTCTTGATTACCTCGGAAACC 539
Query 480 CTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTACTCAAGTTGTGCTCATGG 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTGTTCAAGTTGTGCTCATGG 599
Query 540 GCTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGGCTTGACCCACTTT 599
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 600 GGTTCATTGAAGGCTACAGAATCGGAGGTGGACCTCTCGGAGAAGGGCTTGACCCGCTTT 659
Query 600 ACCCCGGAGGTGCGTTCGACCCTTTGAACTTGGCAGAGGATCCAGAGGCCTTCTCTGAGC 659
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 660 ACCCCGGAGGTGCGTTCGACCCATTGAACTTGGCTGAGGATCCAGAGGCTTTCTCTGAGC 719
Query 660 TGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTTG 719
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAAGGTGAAGGAGCTTAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTTG 779
Query 720 TCCAAGCCATTGTCACTGGTAAAGGTCCCATTGAGAACTTGTTTGATCACTTGGCTGATC 779
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 780 TCCAAGCCATTGTTACTGGTAAAGGTCCCATTGAGAACTTATTTGATCATTTGGCTGATC 839
Query 780 CTGTGGCTAACAACGCCTGGGCTTATGCTACTAACTTTGTCCCCGGAAAGTAATTGTCAT 839
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |
Sbjct 840 CTGTGGCTAACAACGCCTGGTCTTACGCTACTAACTTTGTCCCCGGAAATTAATTATCTT 899
Query 840 ATGTATTTCCTTCATAATCT 859
|||||||| |||||||||||
Sbjct 900 ATGTATTTGCTTCATAATCT 919
> AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799234-1800392 REVERSE LENGTH=1063
Length=1063
Score = 1325 bits (717), Expect = 0.0
Identities = 814/861 (95%), Gaps = 5/861 (1%)
Strand=Plus/Plus
Query 1 TCCTTTCATTGTAGTTTAAGA-AAAGATTACGATAATGGCTACATCAGCTATCCAGCAAT 59
|||||||||||||| |||| | |||||||||||| ||||| |||||||||||||| ||||
Sbjct 31 TCCTTTCATTGTAG-TTAA-ACAAAGATTACGATTATGGCCACATCAGCTATCCAACAAT 88
Query 60 CCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTCCAACGACCTCCTCCGCAAGGTTGGTG 119
|||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||| || |
Sbjct 89 CCTCCTTCGCCGGCCAAACGGCTCTCAAGCCCTCCAGCGACCTCATCCAAAAGGTGGGCG 148
Query 120 T-TTCCGGTGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCTCAAAGCATC 178
| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 149 TCTT-GGGCGGTGGCCGTGTGACCATGCGTCGTACCGTCAAGTCTACTCCCCAAAGCATC 207
Query 179 TGGTATGGACCAGACCGTCCCAAATACTTGGGACCATTCTCGGAGAACACACCATCGTAC 238
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 208 TGGTATGGACCAGACCGTCCCAAGTACTTGGGACCATTCTCGGAGAACACACCGTCTTAC 267
Query 239 TTAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCAGCTGACCCG 298
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 268 TTAACTGGAGAATACCCCGGAGACTACGGCTGGGACACCGCTGGACTCTCGGCTGACCCG 327
Query 299 GAGACATTCGCTAAGAACCGTGAGCTTGAGGTAATCCACAGCAGATGGGCTATGTTGGGT 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 328 GAGACATTCGCTAAGAACCGTGAGCTTGAAGTAATCCACAGCAGATGGGCTATGTTGGGT 387
Query 359 GCTCTTGGCTGCACATTCCCTGAGATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCC 418
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 388 GCTCTCGGATGCACATTCCCTGAAATTCTCTCCAAGAACGGTGTTAAATTCGGAGAAGCC 447
Query 419 GTGTGGTTCAAGGCGGGTTCTCAGATCTTCTCAGAAGGAGGTCTTGATTACCTCGGAAAC 478
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 448 GTGTGGTTCAAGGCAGGCTCTCAGATTTTCTCAGAAGGAGGTCTTGATTACCTCGGAAAC 507
Query 479 CCTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTACTCAAGTTGTGCTCATG 538
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 508 CCTAACTTGATCCACGCGCAAAGCATCTTAGCCATCTGGGCTGTTCAAGTTGTGCTCATG 567
Query 539 GGCTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGGCTTGACCCACTT 598
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 568 GGGTTCATTGAAGGCTACAGAATCGGAGGTGGACCACTCGGAGAAGGACTTGACCCGCTT 627
Query 599 TACCCCGGAGGTGCGTTCGACCCTTTGAACTTGGCAGAGGATCCAGAGGCCTTCTCTGAG 658
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 628 TATCCCGGAGGTGCGTTCGACCCATTGAACTTGGCTGAGGATCCAGAGGCTTTCTCTGAG 687
Query 659 CTGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CTGAAGGTGAAGGAGCTCAAGAACGGTCGTCTTGCCATGTTCTCTATGTTTGGATTCTTT 747
Query 719 GTCCAAGCCATTGTCACTGGTAAAGGTCCCATTGAGAACTTGTTTGATCACTTGGCTGAT 778
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 748 GTCCAAGCCATTGTTACTGGTAAAGGTCCCATTGAGAACTTATTTGATCATTTGGCTGAT 807
Query 779 CCTGTGGCTAACAACGCCTGGGCTTATGCTACTAACTTTGTCCCCGGAAAGTAATTGTCA 838
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 808 CCTGTGGCTAACAACGCCTGGTCTTACGCTACTAACTTTGTCCCCGGAAAGTAATTATCT 867
Query 839 TATGTATTTCCTTCATAATCT 859
||||||||| |||||||||||
Sbjct 868 TATGTATTTGCTTCATAATCT 888
> AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem
II light harvesting complex gene 2.3 | chr3:10255947-10257011
FORWARD LENGTH=946
Length=946
Score = 839 bits (454), Expect = 0.0
Identities = 688/802 (86%), Gaps = 11/802 (1%)
Strand=Plus/Plus
Query 34 AATGGCTACATCAGCTATCCAGCAATCCTCCTTCGCCGGCCAAACGGCCCTCAAGCCCTC 93
|||||| || ||||| ||||| || || || ||||| ||||||||| |||| ||||| ||
Sbjct 55 AATGGCCACTTCAGCAATCCAACACTCTTCTTTCGCTGGCCAAACGACCCTAAAGCCATC 114
Query 94 CAACGACCTCCTCCGCAAGGTTGGTGTTTCC---GGTGGTGGCCGTGTGACCATGCGTCG 150
|||||| ||||||||||| | || | ||| || |||||||| | | |||||||||
Sbjct 115 CAACGATCTCCTCCGCAAAATCGGAGCCTCCAATGGCGGTGGCCGCATCATCATGCGTCG 174
Query 151 TACCGTCAAGTCTACTCCTCAAAGCATCTGGTATGGACCAGACCGTCCCAAATACTTGGG 210
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||
Sbjct 175 TACCGTCAAGTCTACTCCTCAGAGCATCTGGTACGGACCAGACCGTCCCAAATACCTAGG 234
Query 211 ACCATTCTCGGAGAACACACCATCGTACTTAACCGGAGAATACCCCGGAGACTACGGCTG 270
|||||| || || ||||||||||| ||| |||||||||||||||| ||||||||||| ||
Sbjct 235 ACCATTTTCCGAAAACACACCATCATACCTAACCGGAGAATACCCTGGAGACTACGGTTG 294
Query 271 GGACACCGCTGGACTCTCAGCTGACCCGGAGACATTCGCTAAGAACCGTGAGCTTGAGGT 330
|||||||||||| |||||||| || || || |||||||| ||||| |||||||| || ||
Sbjct 295 GGACACCGCTGGTCTCTCAGCCGATCCAGAAACATTCGCAAAGAATCGTGAGCTCGAAGT 354
Query 331 AATCCACAGCAGATGGGCTATGTTGGGTGCTCTT-GGCTGCACATTCCCTGAGATTCTCT 389
|||||||| |||||||| |||||||| ||| || |||||||| |||||||| |||||||
Sbjct 355 GATCCACAGTAGATGGGCAATGTTGGGAGCT-TTAGGCTGCACCTTCCCTGAAATTCTCT 413
Query 390 CCAAGAACGGTGTTAAATTCGGAGAAGCCGTGTGGTTCAAGGCGGGTTCTCAGATCTTCT 449
| || ||||| || |||||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 414 CAAAAAACGGAGTCAAATTCGGTGAAGCCGTGTGGTTCAAGGCAGGATCTCAAATCTTCT 473
Query 450 CAGAAGGAGGTCTTGATTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATCTTAG 509
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 474 CAGAAGGAGGGCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGCAAAGCATATTAG 533
Query 510 CCATCTGGGC-TACTCAAGTTGTGCTCATGGGCTTCATTGAAGGCTACAGAATCGGAGGT 568
| || ||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 534 CTATATGGGCGTG-TCAAGTTGTGCTAATGGGATTCATTGAAGGGTACAGAATCGGAGGT 592
Query 569 GGACCACTCGGAGAAGGGCTTGACCCACTTTACCCCGGAGGTGCGTTCGACCCTTTGAAC 628
|| || || || |||||||||||||| |||||||| || || || |||||||| ||||||
Sbjct 593 GGTCCTCTTGGGGAAGGGCTTGACCCGCTTTACCCGGGCGGGGCCTTCGACCCGTTGAAC 652
Query 629 TTGGCAGAGGATCCAGAGGCCTTCTCTGAGCTGAAGGTGAAGGAGCTCAAGAACGGTCGT 688
|| || ||||||||||| || || || ||| |||| ||||||||||| || |||||||||
Sbjct 653 TTAGCGGAGGATCCAGAAGCGTTTTCAGAGTTGAAAGTGAAGGAGCTTAAAAACGGTCGT 712
Query 689 CTTGCCATGTTCTCTATGTTTGGATTCTTTGTCCAAGCCATTGTCACTGGTAAAGGTCCC 748
||||| |||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 713 CTTGCTATGTTCTCAATGTTTGGATTCTTTGTCCAAGCCATAGTTACCGGTAAAGGTCCG 772
Query 749 ATTGAGAA-CTTGTTTGATCAC-TTGGCTGATCCTGTGGCTAACAACGCCTGGGCTTATG 806
|| || || || ||| |||||| ||| | || |||||||||||||| || |||||||| |
Sbjct 773 ATCGAAAATCT-GTTCGATCACATTG-CAGACCCTGTGGCTAACAATGCTTGGGCTTACG 830
Query 807 CTACTAACTTTGTCCCCGGAAA 828
| || ||||| |||||||||||
Sbjct 831 CCACCAACTTCGTCCCCGGAAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5