BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930837
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 180 2e-44
AT3G17500.1 | Symbols: | F-box family protein | chr3:5986685-5... 171 1e-41
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 54.7 1e-06
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 180 bits (97), Expect = 2e-44
Identities = 405/548 (74%), Gaps = 44/548 (8%)
Strand=Plus/Plus
Query 149 TTAAAGGGTTCACTTAGCTTAAAAG-ATT-TCCATTATAATTCTA-AACAAGTCAAGATA 205
||||| ||| |||||| | | |||| ||| ||| | | |||| | || ||||| | |||
Sbjct 239 TTAAA-GGTGCACTTAACCT-AAAGAATTATCC-TCCTTATTC-AGAAGAAGTCGATATA 294
Query 206 GCCCG-AGTTTTTCACTGCGATGGTTTATTGTTATGCATC-ACCAAGGA-TGATAGACTC 262
| | || || |||||| |||||||||||| |||| | | || | ||| | ||||| |
Sbjct 295 -CATGAAGCTTGTCACTGTGATGGTTTATTGCTATGTA-CAACTATGGACT-ATAGAATA 351
Query 263 GTGGTTTGGAACCCGTGTTTGGGAGAAA-ATAGGTGGATCCCACTCAGAACTGATTACAA 321
||||||||||||||||||||||| |||| | |||||||||| | | | | | || |
Sbjct 352 GTGGTTTGGAACCCGTGTTTGGGGGAAACA-AGGTGGATCCGA-T--GGCCCAAAAAC-A 406
Query 322 GGGAATAACTATGTTTGCTCTAGGATACCA-AAATAACAAATCTTGTCATAGCTACAAAA 380
| | ||| |||||||||||||||| | ||| ||||||| | | | || ||||||||
Sbjct 407 TTTACT--CTAGGTTTGCTCTAGGATACGAGAAA-AACAAATATGGCCGTATCTACAAAA 463
Query 381 TCTTGAGGTGGTGGAATTGT---TATGAACCAACCCACC-ATGTTGTTGGGTTAGAAATC 436
|||||||||| ||| || || || |||||| || | |||| || ||| ||||||
Sbjct 464 TCTTGAGGTGTTGGGATCGTCACAATTCACCAACTGGCCGA-GTTGATGAGTTTGAAATC 522
Query 437 TATGAGTTTAGCTCTGATTCATGGAGAGTTTTTGATAAAGTCGATCTCGATTTCTATTTA 496
|||||||||||||||||||||||||| ||| ||||| |||| ||| |||| | | ||
Sbjct 523 TATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATCTCGTCGCTCTTGATTGCCACATA 582
Query 497 -CAA-ACAAATTCTTGTGTGTCTTTGAAGGGAAATACTTACTGGCTTACTT-TAGATCTT 553
|| ||| ||| || | ||||| |||||||||||||| |||||| | | | |||
Sbjct 583 GCATCACATATTGGCGT-T-TCTTTCAAGGGAAATACTTATTGGCTTGCGTCT-GATAAA 639
Query 554 AGTGA-AAAG-T----TCTTCCACAGTTTTGATTTTACAAGGGAGAGATTTAAACGTTTG 607
| || ||| | |||| | | || |||||||||| || ||||||| ||| ||
Sbjct 640 AAAGACAAATATGGACTCTTGCTTTGCTTCGATTTTACAACAGAAAGATTTACGCGTCTG 699
Query 608 TGTCTTCCACCAAATCCGAAATCGTGT-TAT-ACGGTTCTATCAGTTGTTAGAGAAAAAC 665
|||||||||||| || | | | |||| || | || ||||||||||||| ||| |||||
Sbjct 700 TGTCTTCCACCATCTCAGGA-T-GTGTCTAAGATGGCTCTATCAGTTGTTGGAGGAAAAC 757
Query 666 AGCTCTCA 673
| ||||||
Sbjct 758 AACTCTCA 765
> AT3G17500.1 | Symbols: | F-box family protein | chr3:5986685-5988498
FORWARD LENGTH=1317
Length=1317
Score = 171 bits (92), Expect = 1e-41
Identities = 216/273 (79%), Gaps = 20/273 (7%)
Strand=Plus/Plus
Query 215 TTTCACTGCGATGGTTTATTGTTATGCATCACCAAGGATGATAGACTCGTGGTTTGGAAC 274
|||||||||||||||||||||||||||| |||||| || |||||||| | ||||||||||
Sbjct 289 TTTCACTGCGATGGTTTATTGTTATGCACCACCAAAGACGATAGACTTGAGGTTTGGAAC 348
Query 275 CCGTGTT-TGGGAGAAAATAGGTGGATCCCACTCAG-A-ACTGATTACAAGGGAATAACT 331
|| ||| ||| ||| ||| || ||| || ||| | || |||||||| | |||||
Sbjct 349 CCTTGTACTGGCC-AAACCAGGCGGGTCCAACACAGTATAC--ATTACAAG--ACTAACT 403
Query 332 ATG--TTTGCTCTAGGATACCAAAATAACAAATCTTGTCATAGCTACAAAATCTTGAGGT 389
|| |||| ||| || ||| || ||||| ||| | ||||||||||||||||||||||
Sbjct 404 CTGAGTTTGTTCTTGGGTACGTCAACAACAACTCTCGCCATAGCTACAAAATCTTGAGGT 463
Query 390 GGTGGAATTGTTA--TGAACCAACCCACC-ATGTT-GTTGGGTTAGAAATCTATGAGTTT 445
||||||| ||| || | ||| ||| | ||| || | ||| ||||||||||| |||
Sbjct 464 ACTGGAATTTTTACATGT-CTAACT-ACCGA-GTTAGT-GAGTTCGAAATCTATGACTTT 519
Query 446 AGCTCTGATTCATGGAGAGTTT-TTGATAAAGT 477
||||||||||||||||| |||| ||||| ||||
Sbjct 520 AGCTCTGATTCATGGAG-GTTTATTGATGAAGT 551
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 510 GTGTGTCTTTGAAGGGAAATACTTACTGG 538
|||||||||||||||||||||||||||||
Sbjct 1817 GTGTGTCTTTGAAGGGAAATACTTACTGG 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5