BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930838
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04920.1 | Symbols: | F-box and associated interaction doma... 390 1e-107
AT3G22700.1 | Symbols: | F-box and associated interaction doma... 300 2e-80
AT3G22720.1 | Symbols: | F-box and associated interaction doma... 274 1e-72
AT3G22710.1 | Symbols: | F-box family protein | chr3:8026202-8... 89.8 5e-17
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 63.9 3e-09
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 56.5 6e-07
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 54.7 2e-06
> AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:1726138-1727268 FORWARD LENGTH=1131
Length=1131
Score = 390 bits (211), Expect = 1e-107
Identities = 651/855 (76%), Gaps = 64/855 (7%)
Strand=Plus/Plus
Query 34 GATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAGTCCCAGCCACATCTCACAAA 93
||||| || ||||||| | || || ||||||| ||| |||||||||||||||| |||
Sbjct 7 GATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAA 66
Query 94 CAG-TTAAGATCTACTTGCAAACTATGGAACGT-TTTAATAAAGAAAAACCGAAGATTCA 151
| | ||| | | ||||||||||| ||||||| | ||| || ||||||||||||||||
Sbjct 67 C-GATTACGGTTTACTTGCAAACAATGGAAC-TCTTT-AT--TCAAAAACCGAAGATTCA 121
Query 152 CCGAAAAGCACTTTCACGAAGCTTCAAAGCAGTCAGC-GGTACTGATGT-TGG-ATGATC 208
| || ||||||||| ||||| |||||||||| | || || | | ||| | |||
Sbjct 122 CAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTC-TCATGTTCT-CT-TATGGAAGGATT 178
Query 209 GTAAGGTTCGTTCAATGAACGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTTTAAGA 268
|| |||| || |||||| | | ||||||||| |||||| | | ||||||||||||||||
Sbjct 179 ATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGA 238
Query 269 GTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT-TAATATAGCTAGAGTT 327
||| ||||||||||||||||||||||| ||||| ||||||||| | ||||||| | ||||
Sbjct 239 GTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCT-ATATAGCCAAAGTT 297
Query 328 TTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGGTTTGGAAT 387
||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 298 TTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAAT 357
Query 388 CCGTATTTTGGGGTAACCAGGTGGATCCAACTC--AAATCTGATTATAAGAGCG-ACTT- 443
|||| ||| |||| ||||||||||||| |||| ||| |||||| ||| | | ||
Sbjct 358 CCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAA-TGATTACAAGC-CATA-TTC 413
Query 444 TACCTATGCTCTAGGATACGTAGATAACAAATCTTGTCGTACCTACAAAATCTTGAGGCC 503
|| | | ||||||||||| | |||||||||| || |||| ||||||||||||||||
Sbjct 414 TAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTT 473
Query 504 TTGGGAAATACCTA---G-CATTGAAGG-TCTTGGGTTC-G--A-AAT--CTATGACTTT 552
|||| | || | || | || || | |||| | | | ||| |||||| |||
Sbjct 474 TTGG-ACAT-CTTATTTGACACCAAACCATATTGGCCTAAGGTATAATATCTATGAGTTT 531
Query 553 AGTTCTAATTCATGGAGGGTTCCTCTA-AGTAACGTCGCTTTATTATAC-ACCTACT--T 608
| || ||||||||||||||| | | | ||| ||| || | | || || | || |
Sbjct 532 ACCACTGATTCATGGAGGGTTCTTATTGA-TAAAGTCTCTCTC--A-ACTACTTTCTCAT 587
Query 609 CGATTCTGATACTGGTGTGTCTTTGAAGGGAAATACTTACTGGCTTAATTATA-AT-A-G 665
|| || || | |||||||||||| || ||||||||||| |||||| || || || | |
Sbjct 588 AGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTT-TAGATGAAG 646
Query 666 TGA-AGATTTCTTATTCCCTTTTGATTTTA-AGACAGAGAGATTTAAATGTTTGC--CT- 720
| | |||||||| || ||||||||||| | | |||||||||||| ||||| ||
Sbjct 647 AAACAAATTTCTTACTCGGTTTTGATTTTACA-ATGGAGAGATTTAAACGTTTGTGTCTT 705
Query 721 CCGC-CAACATG-GA-TCGATGGTACGGTAGTTCTATCAGTTGTTAGAGAAGAACAACTC 777
|| | ||| || || | | || |||| | |||||||| ||||||||||||||| |||||
Sbjct 706 CC-CTCAA-ATAAGAATTG-TGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTC 762
Query 778 TCACTTTTATATGAAAA-TAATAGAACATCAAAGATGGAGATATGGATTACCACTA-ATA 835
||| | | | || | || | | | ||||||||||||| || ||||| |||| || | |
Sbjct 763 TCAGTATCACATCAGAACTTTT-GTTCATCAAAGATGGATATTTGGATGACCAATAGA-A 820
Query 836 TTGATACTGAAGCCG 850
|||||| |||| |||
Sbjct 821 TTGATAGTGAAACCG 835
> AT3G22700.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8024798-8025814 REVERSE LENGTH=1017
Length=1017
Score = 300 bits (162), Expect = 2e-80
Identities = 654/875 (75%), Gaps = 99/875 (11%)
Strand=Plus/Plus
Query 31 TCGGATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAGTCCCAGCCACATCTCAC 90
||| |||| ||| |||||| ||||||||||||||| ||| || ||||||||||||| |
Sbjct 4 TCGAATCTTCCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACATCTCTC 63
Query 91 AAACAG-TTAAGATCTACTTGCAAACTATGGAACGTTTTAATAAAGAAAAACCGAAGATT 149
|||| | ||| |||| ||||| | || |||||||| ||| || |||| ||||||||||
Sbjct 64 AAAC-GATTACGATCGACTTGTAGACAATGGAACGCTTT-AT--TGAAAGACCGAAGATT 119
Query 150 CACCGAAAAGCACTTTCACGAAGCTTCAAAGCAGTCAGC-GGTACTGATGTTGGATGATC 208
||| || |||||||||| |||| ||||| |||| | || || ||||| || |
Sbjct 120 CACAGAGAAGCACTTTCGTAAAGCACCAAAGGAGTC-TCTAGTTCTCATGTT-GA--A-A 174
Query 209 GTAAGGTTCGTTCAATGAACGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTTT-AAG 267
| || | || | ||| |||||||||||| || ||||||||||||||||| |||
Sbjct 175 G-AA------AT-AA-G--CGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAAAG 223
Query 268 AGTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGTTAATATAG-CTAGAGT 326
| ||||||| || |||||||||| |||||||||| |||||||||| |||||| | | |||
Sbjct 224 A-TGCACTTGGCTTAAAGGATTCCCATTCTAATTCAGAACAAGTTGATATAGTCCA-AGT 281
Query 327 TTTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGA-AGATAGACTCGTGGTTTGGA 385
| |||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 282 TCTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGACA-ATAGACACGTGGTTTGGA 340
Query 386 ATCCGTATTTTGGGGTAACC-AGGTGGATCCAACTCAAA-TCTGATTATA--AGAG-CGA 440
|||||| ||| |||| |||| | ||||||||| ||||| | |||||| |||| | |
Sbjct 341 ATCCGTGTTTGGGGGAAACCCAT-TGGATCCAATTCAAAGT-TGATTACGGGAGAGTCTA 398
Query 441 CTTTACCTATGCTCTAGGATACGTAGATAACAA--A-TCTTGTCGTACCTACAAAATCTT 497
|| | || |||||||||||| | | ||||| | ||||| |||| ||||||||||||
Sbjct 399 CTCCAGCTTTGCTCTAGGATATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTT 458
Query 498 GAGGCCTTGGGAAA-TACC--T-AGCAT-TGA--A--G-GTCTT-G-GG-TTCGAAATCT 544
| || ||| ||| || | | | || | | | | ||| | || || ||||| |
Sbjct 459 GTGGAGGTGGAAAAGTAACGATTA-CAAATCATCACCGCGTCAAAGAGGGTTTGAAATAT 517
Query 545 ATGACTTTAGT-TCTAATTCATGGAGGGTTCCTC-TAA-GT-AA-C--GTCGCTTTATT- 596
| || |||| | ||| || |||||||||| | | | || || | | | |||| |
Sbjct 518 ACGAGTTTA-TCTCTGATAAATGGAGGGTTATTGATGACGTCAATCACGACTCTTTGGTC 576
Query 597 A-T-ACACCTACTTCG-A--TT-CTGATACTGGTGTGTCTTTGAAGGGAAATACTTACTG 650
| | ||| ||| || | | || ||| | | | ||||||||||||||||||| ||||||
Sbjct 577 AATCACAACTATTTAGGACGTTGCTG-T-C-GC-GTGTCTTTGAAGGGAAATATTTACTG 632
Query 651 GCTTAATT-ATAATAGT-GAAGAT--TTCTT-AT-TCC-CTT-T-T--GATTTTAAGACA 699
|||| || || || || ||||| |||| || | ||| | | || ||||| |||
Sbjct 633 GCTTG-TTGATGAT-GTTGAAGACAATTCTAGATCTTTACTTATGTTTGACTTTAAAACA 690
Query 700 GAGAGATTTAAATGT-T-TGCCT-CCGCCAACATGGA---TCGATGGT-ACGGTAGTTCT 752
|||||||||||| || | ||||| |||| | | || | | |||| || | ||| |
Sbjct 691 GAGAGATTTAAACGTCTATGCCTTCCGC-ATT-TCGAAAAT-GTTGGTCACA-TGGTTTT 746
Query 753 ATCAGTTGTTAGAGAAGAACAACTCTCACTTTTATAT-GAAAATAATAGA-ACATCAAAG 810
|||| ||||||||||||||||||||||| | |||||| | | | | ||| |||||
Sbjct 747 ATCATTTGTTAGAGAAGAACAACTCTCAGTATTATATTGGAGCCG-T-GCTACACCAAAG 804
Query 811 ATGGAGATATGGATTACCACTAATATTGATACTGA 845
|||||||||||||| |||| ||| |||||||||||
Sbjct 805 ATGGAGATATGGATAACCAATAACATTGATACTGA 839
> AT3G22720.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8028961-8030097 REVERSE LENGTH=1137
Length=1137
Score = 274 bits (148), Expect = 1e-72
Identities = 387/496 (78%), Gaps = 41/496 (8%)
Strand=Plus/Plus
Query 31 TCGGATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAG-TCCCAGCCACATCTCA 89
|||||||| ||| ||||| ||||| ||||||||| ||| | |||| ||||||||||
Sbjct 4 TCGGATCTTCCTTTAGATTTGGTAGAGAAAATACTCTCTAGGGTTCCC-GCCACATCTCT 62
Query 90 CAAACAG-TTAAGATCTACTTGCAAACTATGGAACGTTTTAATAAAGAAAAACCGAAGAT 148
||||| | || |||| ||||| | || |||||||| ||| || |||| |||||||||
Sbjct 63 CAAAC-GACTACGATCGACTTGTAGACGATGGAACGCTTT-AT--TGAAAGACCGAAGAT 118
Query 149 TCACCGA-AAAGCACTTTCACGAAGCTTCAAAGCAGTC-AGCGGTACTGATGTTGGATGA 206
||||||| ||| |||||||| |||| ||||| |||| || || || |||||| | ||
Sbjct 119 TCACCGAGAAA-CACTTTCATAAAGCACCAAAGGAGTCTAG-AGTTCTCATGTTGAAAGA 176
Query 207 TCGTA-A-GGTTCGTT-CAATGAA-CGTTAATCTCAACGTTTCTGCTCCATCTATAGAGT 262
||| | |||| || |||| || ||| |||||||| ||| || |||||||| |||| |
Sbjct 177 --GTATAGGGTT-TTTCCAAT-AAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACT 232
Query 263 TT-AAGAGTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT--TAATATAG 319
|| ||| |||||||| | | |||| |||||||||| ||||||||| | ||| |
Sbjct 233 TTAAAG-GTGCACTT-G-GT----TATTCCCATTCTAATTCAGAACAAGTCGTGATA-AC 284
Query 320 CTAGAGTTTTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGG 379
| | ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 285 CGA-AGTTTTTCACTGCGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGG 343
Query 380 TTTGGAATCCGTATTTTGGGGTAACCAGGTGGATCCAACTCAAA-TCTGATTATAAGAGC 438
|||||||||||| ||| |||| ||||| ||||||||||||||| | |||||| |||
Sbjct 344 TTTGGAATCCGTGTTTGGGGGAAACCAAATGGATCCAACTCAAAGT-TGATTACCGGAGA 402
Query 439 GACTT-TACC-TAT--GCTCTAGG--ATA-CGTAGATAACAAATCTTGTCGTACCTACAA 491
|| | | || ||| |||||||| ||| | | | ||| |||| || |||| ||| ||
Sbjct 403 TACGTCT-CCATATTTGCTCTAGGGTATATCCAAAACAACGAATCCTGCCGTAGCTATAA 461
Query 492 AATCTTGAGGCCTTGG 507
||||||| || |||||
Sbjct 462 AATCTTGTGGACTTGG 477
> AT3G22710.1 | Symbols: | F-box family protein | chr3:8026202-8027274
REVERSE LENGTH=981
Length=981
Score = 89.8 bits (48), Expect = 5e-17
Identities = 132/170 (78%), Gaps = 15/170 (9%)
Strand=Plus/Plus
Query 685 TTTGATTTTA-AGACAGAGAGATTTAAATGT-T-TGCC-TCCGCCA---ACATGGATCGA 737
|||||||||| | ||||||||||| ||| || | ||| |||| || || ||| |
Sbjct 502 TTTGATTTTACA-ACAGAGAGATTCAAACGTCTACGCCTTCCG-CATTTCCA-AGAT-GT 557
Query 738 TGGTACGGTAGTTCTATCAGTTGTTAGAGAAGAACAACTCTCACTTTTATAT-GAAAATA 796
||||| | | ||||||||||||||||||||||||||||||| | ||| || | | |
Sbjct 558 TGGTAATATGGATCTATCAGTTGTTAGAGAAGAACAACTCTCAATATTACATTGGAC-TC 616
Query 797 ATAGA-ACATCAAAGATGGAGATATGGATTACCACTAATATTGATACTGA 845
|| | ||||||||||||||||| ||||| || | ||| |||||||||||
Sbjct 617 GTA-ATACATCAAAGATGGAGATTTGGATAACTAATAACATTGATACTGA 665
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 63.9 bits (34), Expect = 3e-09
Identities = 48/55 (87%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1105 CCAATCATCTTCAATTATGTTCCAAGTTTGGTTCAAATATAGCAAGGTAGAGGCA 1159
||||| || ||||||||||||||||||||||||||||| || ||||| || |||
Sbjct 1051 CCAATTATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGGAAGGTGGATGCA 1105
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 56.5 bits (30), Expect = 6e-07
Identities = 37/40 (93%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 613 TCTGATACT-GGTGTGTCTTTGAAGGGAAATACTTACTGG 651
||||| ||| |||||||||||||||||||||||||||||
Sbjct 1807 TCTGA-ACTCAGTGTGTCTTTGAAGGGAAATACTTACTGG 1845
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1114 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1142
|||||||||||||||||||||||||||||
Sbjct 1079 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5