BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930838 Length=1166 Score E Sequences producing significant alignments: (Bits) Value AT2G04920.1 | Symbols: | F-box and associated interaction doma... 390 1e-107 AT3G22700.1 | Symbols: | F-box and associated interaction doma... 300 2e-80 AT3G22720.1 | Symbols: | F-box and associated interaction doma... 274 1e-72 AT3G22710.1 | Symbols: | F-box family protein | chr3:8026202-8... 89.8 5e-17 AT3G22730.1 | Symbols: | F-box and associated interaction doma... 63.9 3e-09 AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 56.5 6e-07 AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 54.7 2e-06 > AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:1726138-1727268 FORWARD LENGTH=1131 Length=1131 Score = 390 bits (211), Expect = 1e-107 Identities = 651/855 (76%), Gaps = 64/855 (7%) Strand=Plus/Plus Query 34 GATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAGTCCCAGCCACATCTCACAAA 93 ||||| || ||||||| | || || ||||||| ||| |||||||||||||||| ||| Sbjct 7 GATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAA 66 Query 94 CAG-TTAAGATCTACTTGCAAACTATGGAACGT-TTTAATAAAGAAAAACCGAAGATTCA 151 | | ||| | | ||||||||||| ||||||| | ||| || |||||||||||||||| Sbjct 67 C-GATTACGGTTTACTTGCAAACAATGGAAC-TCTTT-AT--TCAAAAACCGAAGATTCA 121 Query 152 CCGAAAAGCACTTTCACGAAGCTTCAAAGCAGTCAGC-GGTACTGATGT-TGG-ATGATC 208 | || ||||||||| ||||| |||||||||| | || || | | ||| | ||| Sbjct 122 CAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTC-TCATGTTCT-CT-TATGGAAGGATT 178 Query 209 GTAAGGTTCGTTCAATGAACGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTTTAAGA 268 || |||| || |||||| | | ||||||||| |||||| | | |||||||||||||||| Sbjct 179 ATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGA 238 Query 269 GTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT-TAATATAGCTAGAGTT 327 ||| ||||||||||||||||||||||| ||||| ||||||||| | ||||||| | |||| Sbjct 239 GTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCT-ATATAGCCAAAGTT 297 Query 328 TTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGGTTTGGAAT 387 ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| Sbjct 298 TTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAAT 357 Query 388 CCGTATTTTGGGGTAACCAGGTGGATCCAACTC--AAATCTGATTATAAGAGCG-ACTT- 443 |||| ||| |||| ||||||||||||| |||| ||| |||||| ||| | | || Sbjct 358 CCGTGTTTGGGGGAAACCAGGTGGATC-AACTTTGAAAA-TGATTACAAGC-CATA-TTC 413 Query 444 TACCTATGCTCTAGGATACGTAGATAACAAATCTTGTCGTACCTACAAAATCTTGAGGCC 503 || | | ||||||||||| | |||||||||| || |||| |||||||||||||||| Sbjct 414 TAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTT 473 Query 504 TTGGGAAATACCTA---G-CATTGAAGG-TCTTGGGTTC-G--A-AAT--CTATGACTTT 552 |||| | || | || | || || | |||| | | | ||| |||||| ||| Sbjct 474 TTGG-ACAT-CTTATTTGACACCAAACCATATTGGCCTAAGGTATAATATCTATGAGTTT 531 Query 553 AGTTCTAATTCATGGAGGGTTCCTCTA-AGTAACGTCGCTTTATTATAC-ACCTACT--T 608 | || ||||||||||||||| | | | ||| ||| || | | || || | || | Sbjct 532 ACCACTGATTCATGGAGGGTTCTTATTGA-TAAAGTCTCTCTC--A-ACTACTTTCTCAT 587 Query 609 CGATTCTGATACTGGTGTGTCTTTGAAGGGAAATACTTACTGGCTTAATTATA-AT-A-G 665 || || || | |||||||||||| || ||||||||||| |||||| || || || | | Sbjct 588 AGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTT-TAGATGAAG 646 Query 666 TGA-AGATTTCTTATTCCCTTTTGATTTTA-AGACAGAGAGATTTAAATGTTTGC--CT- 720 | | |||||||| || ||||||||||| | | |||||||||||| ||||| || Sbjct 647 AAACAAATTTCTTACTCGGTTTTGATTTTACA-ATGGAGAGATTTAAACGTTTGTGTCTT 705 Query 721 CCGC-CAACATG-GA-TCGATGGTACGGTAGTTCTATCAGTTGTTAGAGAAGAACAACTC 777 || | ||| || || | | || |||| | |||||||| ||||||||||||||| ||||| Sbjct 706 CC-CTCAA-ATAAGAATTG-TGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTC 762 Query 778 TCACTTTTATATGAAAA-TAATAGAACATCAAAGATGGAGATATGGATTACCACTA-ATA 835 ||| | | | || | || | | | ||||||||||||| || ||||| |||| || | | Sbjct 763 TCAGTATCACATCAGAACTTTT-GTTCATCAAAGATGGATATTTGGATGACCAATAGA-A 820 Query 836 TTGATACTGAAGCCG 850 |||||| |||| ||| Sbjct 821 TTGATAGTGAAACCG 835 > AT3G22700.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8024798-8025814 REVERSE LENGTH=1017 Length=1017 Score = 300 bits (162), Expect = 2e-80 Identities = 654/875 (75%), Gaps = 99/875 (11%) Strand=Plus/Plus Query 31 TCGGATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAGTCCCAGCCACATCTCAC 90 ||| |||| ||| |||||| ||||||||||||||| ||| || ||||||||||||| | Sbjct 4 TCGAATCTTCCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACATCTCTC 63 Query 91 AAACAG-TTAAGATCTACTTGCAAACTATGGAACGTTTTAATAAAGAAAAACCGAAGATT 149 |||| | ||| |||| ||||| | || |||||||| ||| || |||| |||||||||| Sbjct 64 AAAC-GATTACGATCGACTTGTAGACAATGGAACGCTTT-AT--TGAAAGACCGAAGATT 119 Query 150 CACCGAAAAGCACTTTCACGAAGCTTCAAAGCAGTCAGC-GGTACTGATGTTGGATGATC 208 ||| || |||||||||| |||| ||||| |||| | || || ||||| || | Sbjct 120 CACAGAGAAGCACTTTCGTAAAGCACCAAAGGAGTC-TCTAGTTCTCATGTT-GA--A-A 174 Query 209 GTAAGGTTCGTTCAATGAACGTTAATCTCAACGTTTCTGCTCCATCTATAGAGTTT-AAG 267 | || | || | ||| |||||||||||| || ||||||||||||||||| ||| Sbjct 175 G-AA------AT-AA-G--CGTCAATCTCAACGTTACTCCTCCATCTATAGAGTTTAAAG 223 Query 268 AGTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGTTAATATAG-CTAGAGT 326 | ||||||| || |||||||||| |||||||||| |||||||||| |||||| | | ||| Sbjct 224 A-TGCACTTGGCTTAAAGGATTCCCATTCTAATTCAGAACAAGTTGATATAGTCCA-AGT 281 Query 327 TTTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGA-AGATAGACTCGTGGTTTGGA 385 | |||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||| Sbjct 282 TCTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGACA-ATAGACACGTGGTTTGGA 340 Query 386 ATCCGTATTTTGGGGTAACC-AGGTGGATCCAACTCAAA-TCTGATTATA--AGAG-CGA 440 |||||| ||| |||| |||| | ||||||||| ||||| | |||||| |||| | | Sbjct 341 ATCCGTGTTTGGGGGAAACCCAT-TGGATCCAATTCAAAGT-TGATTACGGGAGAGTCTA 398 Query 441 CTTTACCTATGCTCTAGGATACGTAGATAACAA--A-TCTTGTCGTACCTACAAAATCTT 497 || | || |||||||||||| | | ||||| | ||||| |||| |||||||||||| Sbjct 399 CTCCAGCTTTGCTCTAGGATATATCCAAAACAACGAATCTTGCCGTAGCTACAAAATCTT 458 Query 498 GAGGCCTTGGGAAA-TACC--T-AGCAT-TGA--A--G-GTCTT-G-GG-TTCGAAATCT 544 | || ||| ||| || | | | || | | | | ||| | || || ||||| | Sbjct 459 GTGGAGGTGGAAAAGTAACGATTA-CAAATCATCACCGCGTCAAAGAGGGTTTGAAATAT 517 Query 545 ATGACTTTAGT-TCTAATTCATGGAGGGTTCCTC-TAA-GT-AA-C--GTCGCTTTATT- 596 | || |||| | ||| || |||||||||| | | | || || | | | |||| | Sbjct 518 ACGAGTTTA-TCTCTGATAAATGGAGGGTTATTGATGACGTCAATCACGACTCTTTGGTC 576 Query 597 A-T-ACACCTACTTCG-A--TT-CTGATACTGGTGTGTCTTTGAAGGGAAATACTTACTG 650 | | ||| ||| || | | || ||| | | | ||||||||||||||||||| |||||| Sbjct 577 AATCACAACTATTTAGGACGTTGCTG-T-C-GC-GTGTCTTTGAAGGGAAATATTTACTG 632 Query 651 GCTTAATT-ATAATAGT-GAAGAT--TTCTT-AT-TCC-CTT-T-T--GATTTTAAGACA 699 |||| || || || || ||||| |||| || | ||| | | || ||||| ||| Sbjct 633 GCTTG-TTGATGAT-GTTGAAGACAATTCTAGATCTTTACTTATGTTTGACTTTAAAACA 690 Query 700 GAGAGATTTAAATGT-T-TGCCT-CCGCCAACATGGA---TCGATGGT-ACGGTAGTTCT 752 |||||||||||| || | ||||| |||| | | || | | |||| || | ||| | Sbjct 691 GAGAGATTTAAACGTCTATGCCTTCCGC-ATT-TCGAAAAT-GTTGGTCACA-TGGTTTT 746 Query 753 ATCAGTTGTTAGAGAAGAACAACTCTCACTTTTATAT-GAAAATAATAGA-ACATCAAAG 810 |||| ||||||||||||||||||||||| | |||||| | | | | ||| ||||| Sbjct 747 ATCATTTGTTAGAGAAGAACAACTCTCAGTATTATATTGGAGCCG-T-GCTACACCAAAG 804 Query 811 ATGGAGATATGGATTACCACTAATATTGATACTGA 845 |||||||||||||| |||| ||| ||||||||||| Sbjct 805 ATGGAGATATGGATAACCAATAACATTGATACTGA 839 > AT3G22720.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8028961-8030097 REVERSE LENGTH=1137 Length=1137 Score = 274 bits (148), Expect = 1e-72 Identities = 387/496 (78%), Gaps = 41/496 (8%) Strand=Plus/Plus Query 31 TCGGATCTCCCTGCGGATTTATTAGAGGAAATACTCTATAGAG-TCCCAGCCACATCTCA 89 |||||||| ||| ||||| ||||| ||||||||| ||| | |||| |||||||||| Sbjct 4 TCGGATCTTCCTTTAGATTTGGTAGAGAAAATACTCTCTAGGGTTCCC-GCCACATCTCT 62 Query 90 CAAACAG-TTAAGATCTACTTGCAAACTATGGAACGTTTTAATAAAGAAAAACCGAAGAT 148 ||||| | || |||| ||||| | || |||||||| ||| || |||| ||||||||| Sbjct 63 CAAAC-GACTACGATCGACTTGTAGACGATGGAACGCTTT-AT--TGAAAGACCGAAGAT 118 Query 149 TCACCGA-AAAGCACTTTCACGAAGCTTCAAAGCAGTC-AGCGGTACTGATGTTGGATGA 206 ||||||| ||| |||||||| |||| ||||| |||| || || || |||||| | || Sbjct 119 TCACCGAGAAA-CACTTTCATAAAGCACCAAAGGAGTCTAG-AGTTCTCATGTTGAAAGA 176 Query 207 TCGTA-A-GGTTCGTT-CAATGAA-CGTTAATCTCAACGTTTCTGCTCCATCTATAGAGT 262 ||| | |||| || |||| || ||| |||||||| ||| || |||||||| |||| | Sbjct 177 --GTATAGGGTT-TTTCCAAT-AAGCGTCAATCTCAAAGTTACTCCTCCATCTGTAGACT 232 Query 263 TT-AAGAGTGCACTTAGCCTAAAGGATTCACATTCTAATTTAGAACAAGT--TAATATAG 319 || ||| |||||||| | | |||| |||||||||| ||||||||| | ||| | Sbjct 233 TTAAAG-GTGCACTT-G-GT----TATTCCCATTCTAATTCAGAACAAGTCGTGATA-AC 284 Query 320 CTAGAGTTTTTCATTGCGATGGTTTGTTGTTATGCACCACCAAGGAAGATAGACTCGTGG 379 | | ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 285 CGA-AGTTTTTCACTGCGATGGTTTGTTGTTATGCACCACCAATGACGATAGACTCGTGG 343 Query 380 TTTGGAATCCGTATTTTGGGGTAACCAGGTGGATCCAACTCAAA-TCTGATTATAAGAGC 438 |||||||||||| ||| |||| ||||| ||||||||||||||| | |||||| ||| Sbjct 344 TTTGGAATCCGTGTTTGGGGGAAACCAAATGGATCCAACTCAAAGT-TGATTACCGGAGA 402 Query 439 GACTT-TACC-TAT--GCTCTAGG--ATA-CGTAGATAACAAATCTTGTCGTACCTACAA 491 || | | || ||| |||||||| ||| | | | ||| |||| || |||| ||| || Sbjct 403 TACGTCT-CCATATTTGCTCTAGGGTATATCCAAAACAACGAATCCTGCCGTAGCTATAA 461 Query 492 AATCTTGAGGCCTTGG 507 ||||||| || ||||| Sbjct 462 AATCTTGTGGACTTGG 477 > AT3G22710.1 | Symbols: | F-box family protein | chr3:8026202-8027274 REVERSE LENGTH=981 Length=981 Score = 89.8 bits (48), Expect = 5e-17 Identities = 132/170 (78%), Gaps = 15/170 (9%) Strand=Plus/Plus Query 685 TTTGATTTTA-AGACAGAGAGATTTAAATGT-T-TGCC-TCCGCCA---ACATGGATCGA 737 |||||||||| | ||||||||||| ||| || | ||| |||| || || ||| | Sbjct 502 TTTGATTTTACA-ACAGAGAGATTCAAACGTCTACGCCTTCCG-CATTTCCA-AGAT-GT 557 Query 738 TGGTACGGTAGTTCTATCAGTTGTTAGAGAAGAACAACTCTCACTTTTATAT-GAAAATA 796 ||||| | | ||||||||||||||||||||||||||||||| | ||| || | | | Sbjct 558 TGGTAATATGGATCTATCAGTTGTTAGAGAAGAACAACTCTCAATATTACATTGGAC-TC 616 Query 797 ATAGA-ACATCAAAGATGGAGATATGGATTACCACTAATATTGATACTGA 845 || | ||||||||||||||||| ||||| || | ||| ||||||||||| Sbjct 617 GTA-ATACATCAAAGATGGAGATTTGGATAACTAATAACATTGATACTGA 665 > AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8031341-8032459 REVERSE LENGTH=1119 Length=1119 Score = 63.9 bits (34), Expect = 3e-09 Identities = 48/55 (87%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1105 CCAATCATCTTCAATTATGTTCCAAGTTTGGTTCAAATATAGCAAGGTAGAGGCA 1159 ||||| || ||||||||||||||||||||||||||||| || ||||| || ||| Sbjct 1051 CCAATTATTTTCAATTATGTTCCAAGTTTGGTTCAAATCGAGGAAGGTGGATGCA 1105 > AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019 FORWARD LENGTH=2500 Length=2500 Score = 56.5 bits (30), Expect = 6e-07 Identities = 37/40 (93%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 613 TCTGATACT-GGTGTGTCTTTGAAGGGAAATACTTACTGG 651 ||||| ||| ||||||||||||||||||||||||||||| Sbjct 1807 TCTGA-ACTCAGTGTGTCTTTGAAGGGAAATACTTACTGG 1845 > AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | chr4:2136444-2137565 FORWARD LENGTH=1122 Length=1122 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1114 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1142 ||||||||||||||||||||||||||||| Sbjct 1079 TTCAATTATGTTCCAAGTTTGGTTCAAAT 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57228621300 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5