BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930857
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05430.1 | Symbols: | Ubiquitin-specific protease family C1... 464 4e-130
> AT2G05430.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1985994-1987266 FORWARD LENGTH=1192
Length=1192
Score = 464 bits (251), Expect = 4e-130
Identities = 468/570 (82%), Gaps = 25/570 (4%)
Strand=Plus/Plus
Query 9 TTGGTCGT-ATCAATGTCGAAGATAGT-AGAGAGTAAATCAACACTTTCTTATCCTAGTA 66
|||||||| | |||||||||||||| | |||||||||||||||||||||| ||| | |||
Sbjct 449 TTGGTCGTGA-CAATGTCGAAGATA-TCAGAGAGTAAATCAACACTTTCTCATCATGGTA 506
Query 67 CTTCACATTTTG-GCGATTTTGACACTGATGAAACCGTGAACATAAACGGTTTTTGGATT 125
|| || || || | ||||| |||| |||||||| |||||||||||| || |||||||||
Sbjct 507 CTGCATATGATGAG-GATTTGGACAATGATGAAATCGTGAACATAAAAGGCTTTTGGATT 565
Query 126 TGCCGATCACAGTTAGGTCAAGC-AAAGCTAATCTTTAAAG-AACATCCAGAGACGGCTT 183
| ||||||| ||||||||| ||| ||| | | ||||| || |||||||||||||| |
Sbjct 566 TTCCGATCAAAGTTAGGTCTAGCGAAA-CGAGTCTTT-GAGAAACATCCAGAGACGACAA 623
Query 184 CAAATTTTTGTCTAAAGAGTTTCTTTGCCAAGGAAACTTACTTGACTGCCCTTTTAAACC 243
|||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 624 CAAAATTTTGTCTAAAGAGTGAATTTGCCAAGGAAACTTACTTGACTGCCCTACTAGACC 683
Query 244 TCATCGACAAGATGAACATGTTATCTCTA-CAATCTCTCTCCAAAGACGATCTAAAGGAA 302
|||| |||| ||| ||||||||| ||| | |||||||||| | ||| ||| ||||| |||
Sbjct 684 TCATTGACATGATAAACATGTTACCTC-AGCAATCTCTCTTCGAAGCCGAACTAAAAGAA 742
Query 303 GTAGACAACACAATTTTGGATCTTGAAGCCGCTGGTTTCAAACTGGATTGGTTAAAAAAG 362
| ||| |||||||||||||| |||||||| || |||||||| |||||||||| |||| |
Sbjct 743 GCAGAAAACACAATTTTGGACCTTGAAGCTGCCGGTTTCAAGTTGGATTGGTTGAAAAGG 802
Query 363 AAATTTGAGGAGATTCGTGTTATTGTGAAGAAAGCGCAGGACCGTGAGG-CTCGGATGAG 421
|| |||||||||||||||||| | |||||||||| || |||| | | ||||||||||
Sbjct 803 AAGCTTGAGGAGATTCGTGTTACTAAGAAGAAAGCGAAGAACCGC-ACGACTCGGATGAG 861
Query 422 AGAACTAGACCGAAAGATCC-GTAAGAAGATGCATGAGTTGGT-GGTTCTTGAAGACA-A 478
|||||||||||||||||| | | ||| | || | |||||| | ||| ||| |||| | |
Sbjct 862 AGAACTAGACCGAAAGATTCAG-AAGCATTTGGAGGAGTTG-TCGGTCCTTCAAGA-AGA 918
Query 479 AATGAAGAAGGAGCAGCTTGAGGCTAAATCCGA-AGAACTTGGATATTATT-ACGACTTT 536
|||||||||||||||| ||||||||| | || | ||| || |||||||| | ||||
Sbjct 919 AATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACA-AACCTGAATATTATTTA-GACTCA 976
Query 537 -TTTATTTGAAGGAAGTTGCATGTGATTCT 565
||| |||||| ||||| ||||||| |||
Sbjct 977 CTTTGTTTGAATGAAGTCACATGTGACTCT 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5