BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930857 Length=566 Score E Sequences producing significant alignments: (Bits) Value AT2G05430.1 | Symbols: | Ubiquitin-specific protease family C1... 464 4e-130 > AT2G05430.1 | Symbols: | Ubiquitin-specific protease family C19-related protein | chr2:1985994-1987266 FORWARD LENGTH=1192 Length=1192 Score = 464 bits (251), Expect = 4e-130 Identities = 468/570 (82%), Gaps = 25/570 (4%) Strand=Plus/Plus Query 9 TTGGTCGT-ATCAATGTCGAAGATAGT-AGAGAGTAAATCAACACTTTCTTATCCTAGTA 66 |||||||| | |||||||||||||| | |||||||||||||||||||||| ||| | ||| Sbjct 449 TTGGTCGTGA-CAATGTCGAAGATA-TCAGAGAGTAAATCAACACTTTCTCATCATGGTA 506 Query 67 CTTCACATTTTG-GCGATTTTGACACTGATGAAACCGTGAACATAAACGGTTTTTGGATT 125 || || || || | ||||| |||| |||||||| |||||||||||| || ||||||||| Sbjct 507 CTGCATATGATGAG-GATTTGGACAATGATGAAATCGTGAACATAAAAGGCTTTTGGATT 565 Query 126 TGCCGATCACAGTTAGGTCAAGC-AAAGCTAATCTTTAAAG-AACATCCAGAGACGGCTT 183 | ||||||| ||||||||| ||| ||| | | ||||| || |||||||||||||| | Sbjct 566 TTCCGATCAAAGTTAGGTCTAGCGAAA-CGAGTCTTT-GAGAAACATCCAGAGACGACAA 623 Query 184 CAAATTTTTGTCTAAAGAGTTTCTTTGCCAAGGAAACTTACTTGACTGCCCTTTTAAACC 243 |||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 624 CAAAATTTTGTCTAAAGAGTGAATTTGCCAAGGAAACTTACTTGACTGCCCTACTAGACC 683 Query 244 TCATCGACAAGATGAACATGTTATCTCTA-CAATCTCTCTCCAAAGACGATCTAAAGGAA 302 |||| |||| ||| ||||||||| ||| | |||||||||| | ||| ||| ||||| ||| Sbjct 684 TCATTGACATGATAAACATGTTACCTC-AGCAATCTCTCTTCGAAGCCGAACTAAAAGAA 742 Query 303 GTAGACAACACAATTTTGGATCTTGAAGCCGCTGGTTTCAAACTGGATTGGTTAAAAAAG 362 | ||| |||||||||||||| |||||||| || |||||||| |||||||||| |||| | Sbjct 743 GCAGAAAACACAATTTTGGACCTTGAAGCTGCCGGTTTCAAGTTGGATTGGTTGAAAAGG 802 Query 363 AAATTTGAGGAGATTCGTGTTATTGTGAAGAAAGCGCAGGACCGTGAGG-CTCGGATGAG 421 || |||||||||||||||||| | |||||||||| || |||| | | |||||||||| Sbjct 803 AAGCTTGAGGAGATTCGTGTTACTAAGAAGAAAGCGAAGAACCGC-ACGACTCGGATGAG 861 Query 422 AGAACTAGACCGAAAGATCC-GTAAGAAGATGCATGAGTTGGT-GGTTCTTGAAGACA-A 478 |||||||||||||||||| | | ||| | || | |||||| | ||| ||| |||| | | Sbjct 862 AGAACTAGACCGAAAGATTCAG-AAGCATTTGGAGGAGTTG-TCGGTCCTTCAAGA-AGA 918 Query 479 AATGAAGAAGGAGCAGCTTGAGGCTAAATCCGA-AGAACTTGGATATTATT-ACGACTTT 536 |||||||||||||||| ||||||||| | || | ||| || |||||||| | |||| Sbjct 919 AATGAAGAAGGAGCAGTTTGAGGCTATGTGTGACA-AACCTGAATATTATTTA-GACTCA 976 Query 537 -TTTATTTGAAGGAAGTTGCATGTGATTCT 565 ||| |||||| ||||| ||||||| ||| Sbjct 977 CTTTGTTTGAATGAAGTCACATGTGACTCT 1006 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27176673527 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5