BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930858

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05440.2 | Symbols: ATGRP9, GRP9 | GLYCINE RICH PROTEIN 9 | ...   479    1e-134
  AT2G05510.1 | Symbols:  | Glycine-rich protein family | chr2:20...   368    2e-101
  AT2G05441.1 | Symbols:  | unknown pseudogene | chr2:1994362-199...   165    3e-40 


> AT2G05440.2 | Symbols: ATGRP9, GRP9 | GLYCINE RICH PROTEIN 9 
| chr2:1993082-1994166 FORWARD LENGTH=727
Length=727

 Score =  479 bits (259),  Expect = 1e-134
 Identities = 336/370 (91%), Gaps = 18/370 (5%)
 Strand=Plus/Plus

Query  1    GTTATTAGAACTTGaaaaaaaTGGCTTCCAAGGCTTTGATTCTGTTGGGTCTCTTCGCAG  60
            |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  33   GTTATTAGAACTTGCAAAAAATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCTCAG  92

Query  61   TTCTTCTCGTCGTCTCGGAAGTGTCTGCCGCAAGGCAGTCGGGCATGGTGAAGCCAGAGA  120
            |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  93   TTCTTCTCGTCGTCTCCGAAGTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGA  152

Query  121  GTGAGGAAACTGTGCAACCTGAAGGTTATGGCGGTGGTTACggaggacatggtggttacg  180
            |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||
Sbjct  153  GTGAGGAAACTGTGCAACCTGAAGGTTATGGCGGTGGCCACGGAGGACATGGTGGTCACG  212

Query  181  gagggggaggaggccacggaggtggaggacacaaaggaggagggggccacggaCTTGacg  240
            ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||
Sbjct  213  GAGGGGGAGGAGGCCACGGACATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACG  272

Query  241  gatacggaggaggaaatggtggttac---ggagg---tggaggacaccacggaggaggtg  294
            |||||||||||||   ||| ||  ||   |||||   |||||||||| ||||||||||||
Sbjct  273  GATACGGAGGAGG---TGGAGGACACTATGGAGGAGGTGGAGGACACTACGGAGGAGGTG  329

Query  295  gtggaggacactacggaggaggtggtggaggacactacggaggaggtggtggaggacacc  354
            |   |||||||||||||||||||||   |||||||||||||||||||||   ||||||| 
Sbjct  330  G---AGGACACTACGGAGGAGGTGG---AGGACACTACGGAGGAGGTGG---AGGACACT  380

Query  355  acggaggagg  364
            ||||||||||
Sbjct  381  ACGGAGGAGG  390


> AT2G05510.1 | Symbols:  | Glycine-rich protein family | chr2:2015706-2016749 
FORWARD LENGTH=707
Length=707

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 359/429 (84%), Gaps = 40/429 (9%)
 Strand=Plus/Plus

Query  1    GTTATTAGAACTTGaaaaaaaTGGCTTCCAAGGCTTTGATTCTGTTGGGTCTCTTCGCAG  60
            ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| 
Sbjct  82   GTTATTACAACTTGAAAAACATGGCATCCAAGGCTTTGATTCTGTTGGGTCTCTTCGCAA  141

Query  61   TTCTTCTCGTCGTCTCGGAAGTGTCTGCCGCAAGGCAGTCGGGCATGGTGAAGCCAGAGA  120
            ||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  142  TTCTTCTGGTGGTCTCCGAAGTTTCTGCCGCAAGACAGTCGGGCATGGTGAAGCCAGAGA  201

Query  121  GTGAGGAAACTGTGCAACCTGAAGGTTAT---GGCGG---TGGT--T-ACggaggac-at  170
            |||||| ||||||||||||||||||||||   || ||   ||||  | |||||||   | 
Sbjct  202  GTGAGGCAACTGTGCAACCTGAAGGTTATCACGGAGGACATGGTGGTCACGGAGGGGGA-  260

Query  171  ggtggttacggagggggaggaggccacggagg-tggaggacacaaaggaggagggggcca  229
            ||    ||||||||   |||||||||||| |  |||||||||||| ||||||||||||||
Sbjct  261  GGCCACTACGGAGG---AGGAGGCCACGG-GCATGGAGGACACAACGGAGGAGGGGGCCA  316

Query  230  cggaCTTGacggatacggaggaggaaatggtggt---tacggaggtggaggac-ac-c-a  283
            ||||||||||||||||||||||||| |||| ||    |||||||| ||||||  || | |
Sbjct  317  CGGACTTGACGGATACGGAGGAGGACATGGAGGACACTACGGAGGAGGAGGAGGACACTA  376

Query  284  cggaggaggtggtggaggacactacggaggaggtggtggaggacactacggaggaggtgg  343
            ||||||||| ||   ||| | | |||| ||   |||||||   |||||||||||   |||
Sbjct  377  CGGAGGAGGAGG---AGG-C-C-ACGGTGG---TGGTGGA---CACTACGGAGG---TGG  421

Query  344  tggaggacaccacggaggaggaggCCACGGGCTTAACGAACCTGTTCAGACTCAGCCGGG  403
               ||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||
Sbjct  422  ---AGGACACCATGGAGGAGGAGGCCACGGGCTTAACGAACCTGTTCAGACGAAACCGGG  478

Query  404  TGTTTAAAA  412
            |||||||||
Sbjct  479  TGTTTAAAA  487


> AT2G05441.1 | Symbols:  | unknown pseudogene | chr2:1994362-1995546 
FORWARD LENGTH=411
Length=411

 Score =  165 bits (89),  Expect = 3e-40
 Identities = 137/159 (86%), Gaps = 8/159 (5%)
 Strand=Plus/Plus

Query  29   CAAGGCTTTGATTCTGTTGGGTCTCTTCGCAGTTCTTCTCGTCGTCTCGGAAGTGTCTGC  88
            |||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  96   CAAGGCTTTGCTTCTGTTGGGTCTCTTCGCAGTTCTTCTCGTCATCTCCGAAGTGTCTGC  155

Query  89   CGCAAGGCAG-TC---G--GGCATGGTGA-AGCCAGAGAGTGAGGAAACTGTGCAACCTG  141
             |||||  |  |    |  |||||||||| | ||||||||||| ||||||||| ||||||
Sbjct  156  GGCAAGTAAAATTATTGTAGGCATGGTGACA-CCAGAGAGTGATGAAACTGTGTAACCTG  214

Query  142  AAGGTTATGGCGGTGGTTACggaggacatggtggttacg  180
            ||||||||||||||||  |||||||||| |||||| |||
Sbjct  215  AAGGTTATGGCGGTGGCCACGGAGGACAAGGTGGTCACG  253



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5