BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930873
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repre... 1471 0.0
> AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repressible
4 | chr3:20189805-20192792 FORWARD LENGTH=2500
Length=2500
Score = 1471 bits (796), Expect = 0.0
Identities = 1201/1395 (86%), Gaps = 33/1395 (2%)
Strand=Plus/Plus
Query 798 GATGATGCTGA-TGGGGAAAAGCTTGCTGAATTGTATGAGAGGCTACATATGTTGGGGTC 856
||||||| | | ||| ||||||||||||||| ||||||| ||||| || || || |||||
Sbjct 917 GATGATGAT-ACTGGAGAAAAGCTTGCTGAACTGTATGACAGGCTGCAGATTTTAGGGTC 975
Query 857 AGATGCTGCTGAAGCGCAGGCTTCCAAAATTCTTGCGGGTTTAGGTTTCACAGAAGATAT 916
||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 976 AGATGCTGCTGAAGCACAGGCATCCAAAATTCTTGCGGGGTTAGGTTTCACAAAAGATAT 1035
Query 917 G-ATAGCGGGTGAAACTAAGTTGC-TCAGTGGTGGCTGGAGGATGCGAATATCATTAGCT 974
| | || | ||| ||| || | | |||||||||||||||||||||||||||||||||||
Sbjct 1036 GCA-AGTGCGTGCGACTCAG-TCCTTCAGTGGTGGCTGGAGGATGCGAATATCATTAGCT 1093
Query 975 AGAGCTCTCTTTGTGCGACCTACCCTTTTGTTGTTAGATGAACCCACTAACCATCTCGAC 1034
|||||||| || |||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1094 AGAGCTCTGTTCGTGCAACCTACCCTTTTGCTGTTAGATGAACCCACTAACCATCTTGAC 1153
Query 1035 CTGAGAGCTGTTCTATGGTTAGAAGAGTATCTATGCCGGTGGAAGAATACGCTGGTTGTT 1094
||||||||||||||||||||||| |||||| | || || |||||||| || || ||||||
Sbjct 1154 CTGAGAGCTGTTCTATGGTTAGAGGAGTATTTGTGTCGCTGGAAGAAGACACTAGTTGTT 1213
Query 1095 GTTTCACATGGAGTGG-ACTTCCTCAACGCTGTCTGCACGGATATAATACATTTGCACGA 1153
|||||||||| | || ||||||||||| | ||||||||||| ||||||||| | || ||
Sbjct 1214 GTTTCACATG-ACCGGGACTTCCTCAACACAGTCTGCACGGAGATAATACATCTCCATGA 1272
Query 1154 C-AAGAGTCTCCACTTGTATCGTGGTAATTACGATGCTTACGAAACCGGATATCTTCAGC 1212
| || | ||||||||| || |||||||||| ||||| || |||| ||||||| ||||
Sbjct 1273 CCAAAA-TCTCCACTTCTACCGTGGTAATTTCGATGGTTTTGAAAGCGGATATGAGCAGC 1331
Query 1213 GACGTAAGGAGATGAACAAAAAGTCTGA-GATTTTCCAGAAACGGATGGAAGCAGCTAAG 1271
| || ||||||||||||||||| | ||| | | | | | |||| |||| ||||||| |||
Sbjct 1332 GTCGCAAGGAGATGAACAAAAAATTTGATG-TCTACGACAAACAGATGAAAGCAGCGAAG 1390
Query 1272 AGGTCTGGAAACAGGG-TAGAACAGGAGAAGGTAAAGGCCTGGGCCAAGCTTGCTGCAGC 1330
||| |||||||| ||| | |||||||||||||||||| | |||||||| || |||| ||
Sbjct 1391 AGGACTGGAAACCGGGGTC-AACAGGAGAAGGTAAAGGACAGGGCCAAGTTTACTGCTGC 1449
Query 1331 GAAAGAAGCATCCAAGCGTAAGGCAAAGGGTAAGAC-GATGGATGACGAGGGCCCAGCAC 1389
||||||||||||||| ||||| ||||||| ||||| | ||||||| || ||||||||||
Sbjct 1450 AAAAGAAGCATCCAAGAGTAAGTCAAAGGGCAAGACAG-TGGATGAAGAAGGCCCAGCAC 1508
Query 1390 CAGAAGCTCCAAGGAAGTGGAGTGATTATAAG-GTGGTGCTCGATTTTCCAGAACCAACC 1448
|||||||||||||||||||||| ||||| | | |||||| || | || |||||||||||
Sbjct 1509 CAGAAGCTCCAAGGAAGTGGAGAGATTACA-GTGTGGTGTTCCACTTCCCAGAACCAACT 1567
Query 1449 GAGCTCCCTCGTCCTCTTCTGCAGTTGATTGAGGTTAGCTTCTGCTA-CCCAAACAAGTC 1507
|||||| ||| ||||||||||||||| ||||||||||||||| |||| ||||| || | |
Sbjct 1568 GAGCTCACTCCTCCTCTTCTGCAGTTAATTGAGGTTAGCTTCAGCTATCCCAA-CAGGCC 1626
Query 1508 AGATTTCAGGCTCTCAAATGTGGATTTAGGTATAGATATGGGGACACGAGTAGCAATAGT 1567
||||||||| ||||| ||||| ||| ||||||| |||||||||||||| || || |||||
Sbjct 1627 AGATTTCAGACTCTCGAATGTTGATGTAGGTATCGATATGGGGACACGGGTTGCGATAGT 1686
Query 1568 TGGGCCTAACGGAGCTGGAAAGTCCACTCTTTTGAATCTTATTGCGGGAGATTTAGTTCC 1627
||||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||
Sbjct 1687 TGGGCCTAACGGAGCAGGAAAGTCCACTCTATTAAATCTTCTTGCGGGAGATTTAGTTCC 1746
Query 1628 GACTGAGGGTGAAGTGAGAAGAAGCCAGAAGCTAAGAATCGGCAGGTACTCGCAGCACTT 1687
|| ||||||||| ||||||||||||||||||| || || |||||||| || ||||| ||
Sbjct 1747 AACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGGATTGGCAGGTATTCTCAGCATTT 1806
Query 1688 TGTTGACCAGTTATCAATGTGGGAGACACCGGTTGAGTATCTTCTTCGTCTGT-ATCCTG 1746
|||||||| ||| ||||| |||| ||||||||| ||||||| |||||||| | ||||||
Sbjct 1807 TGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAGTATCTCCTTCGTCT-TCATCCTG 1865
Query 1747 ACCAAGAGGGATGTAGCAAACAAGAGGCGGTGCGTGCCAAACTGGGCAAGTTTGGGCTAA 1806
|||||||||||| |||||| |||||||| ||||| || || || |||||||||||||||
Sbjct 1866 ACCAAGAGGGATTTAGCAAGCAAGAGGCAGTGCGAGCGAAGCTAGGCAAGTTTGGGCTAC 1925
Query 1807 CAGGTGAAAACCA-TTCCACTCCAACTGCGAAATTGTCTGGAGGACAAAAGGCTAGGGTT 1865
|| || | || || || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1926 CAAGTCACAATCACTTAT-CTCCAATTGCGAAATTGTCTGGAGGACAAAAGGCTAGGGTT 1984
Query 1866 GTGTTAACCTCAATCTCAATGTCGAAGCCACACATTTTGCTTCTTGACGAGCCAACAAAT 1925
||||| ||||| ||||||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 1985 GTGTTCACCTCGATCTCAATGTCAAAACCACACATTTTGCTTCTGGACGAGCCTACAAAT 2044
Query 1926 CACCTCGACATGCAGACG-ATAGATGCCTTGGCGGATGCACTAGATGAGTTCAAAGGAGG 1984
||| | |||||||||| | |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2045 CACTTAGACATGCAGA-GTATAGATGCCTTGGCGGATGCACTAGATGAGTTCACAGGTGG 2103
Query 1985 AGTTGTGTTGGTGAGCCACGACTCGAGACTCATAAGC-CGTGTCTGTGAGGACGAGGAGA 2043
||||||||||||||| |||||||||||||||||| | ||||| |||| ||| |||||||
Sbjct 2104 AGTTGTGTTGGTGAGTCACGACTCGAGACTCATAT-CACGTGTATGTGCGGAAGAGGAGA 2162
Query 2044 AGAGTGAAATTTGGGTTGTGGAAGCCGGGACAGTGACTTTCTTCCGAGGCACGTTTGAAG 2103
||||| ||||||||||||| |||| ||| ||||||| |||||||| |||||| |||||||
Sbjct 2163 AGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAATTTCTTCCCAGGCACATTTGAAG 2222
Query 2104 AGTACAAAGAAGAACTC-ATAGGAGAAATCAAAGCAGAGGTTGATGAGTTAACTTGTCTT 2162
||||||||||||| ||| | || ||||||||||||||| |||||||||| || || | ||
Sbjct 2223 AGTACAAAGAAGATCTCCAAAG-AGAAATCAAAGCAGAAGTTGATGAGTGAAGTTTTGTT 2281
Query 2163 G---GCTGCTAAGGT 2174
| ||| |||||||
Sbjct 2282 GTTAGCTTCTAAGGT 2296
Score = 470 bits (254), Expect = 3e-131
Identities = 636/813 (78%), Gaps = 55/813 (7%)
Strand=Plus/Plus
Query 10 TACAGTGCTAAATGGGTAAGAAGAAGTCAGACGAGATTGTTGCTATCA----GG--AA-- 61
|||||| |||||||||||||||||||||||||||| || ||||| || || ||
Sbjct 90 TACAGTTTTAAATGGGTAAGAAGAAGTCAGACGAGAGTGCTGCTACCACAAAGGTGAAGC 149
Query 62 ----TGGGAAATATACTTTTAAAGATTCGAAGAAGGAGAAAATT-TCAGTCCTAGCC-AT 115
||||||| || ||| |||||||| || || |||||| || |||||| | | | ||
Sbjct 150 CAAGTGGGAAAGATGCTTCGAAAGATTCTAAAAAAGAGAAA-TTGTCAGTC-TCGGCTAT 207
Query 116 TCTTGCAAGCATGGATAAGAAAGATGATAAACCCAAGATCAATAAGGGCTCATCGTCCAG 175
|||||| |||||||| |||||||||||||||| |||| | ||||||||| || ||
Sbjct 208 GCTTGCAGGCATGGATCAGAAAGATGATAAACCGAAGA--A----GGGCTCATCATCTAG 261
Query 176 AGCCAAGACTGCTCTAAAAGTTT-CGTCCTACACTGATGACATAGAT-TATCCTCCTAAT 233
| ||||| |||||| ||| | | | || |||||||||| ||||||| | ||||||| |
Sbjct 262 AACCAAGGCTGCTCCGAAA-TCTACATCTTACACTGATGGCATAGATCT-TCCTCCT--T 317
Query 234 CATGATCAAGAAGACGAAGACCAAGGCGTTTTTGCTGAGAAACAAAGACAGATGCTTGCA 293
| |||| |||||||||| | || | | || |||| || | ||||||| | |||
Sbjct 318 C-TGATGAAGAAGACGA---C---GGTGAATCTGATGAGGAAGAGAGACAGAAGGAAGCA 370
Query 294 ATGAGCAATCAGAAGGGCAAAGAAAAGAAACTCGATTTCTCTGTGACTCCTAAG-ACACA 352
| ||| || | |||| | || ||| | | || || | ||||||||| |||| | |||
Sbjct 371 AGGAGGAAGCTGAAGAGTGAACAAAGGCACCTTGAGATATCTGTGACTGATAAGGA-ACA 429
Query 353 AATGAAGGCAA-AGG-GTAATCAAT-TCTCCGCTCTCCTGGCTGCAGAGATAGG-AAAGA 408
|| |||| | | ||| | || || | | ||||| | |||||||||| | || |||||
Sbjct 430 AAAGAAG-CGAGAGGCGAAAGAAAGAT-TA-GCTCTTCAGGCTGCAGAG-TCGGCAAAGA 485
Query 409 AGGAGGCCT-TGAAGGACGACCATGATGCATTCACGGTTGTTATGGGAAGCAAGACATCG 467
|||||| | |||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 486 GGGAGGC-TATGAAGGACGATCATGATGCATTCACGGTTGTTATTGGAAGCAAGACCTCA 544
Query 468 GTGCTTGATGGAGAAGAAACAGGA-GATGCGAATGTCAAAGATATTAAGATCAGT-TCGT 525
|||||||| ||||| || | || ||||| ||||| || ||||||| || || || |
Sbjct 545 GTGCTTGAAGGAGACGACAT-GGCTGATGCAAATGTTAAGGATATTACCAT-AGAATCTT 602
Query 526 TTTCTGTCTCTGTTCGAGGGAAAGAGCTTCTCACGAATGCCTCTCTCATGATATCACATG 585
||||||| |||| |||||| ||||||||| | | |||||| ||| ||| ||| |||||||
Sbjct 603 TTTCTGTATCTGCTCGAGGTAAAGAGCTTTTGAAGAATGCTTCTGTCAGGATTTCACATG 662
Query 586 GGAAAAGGTATGGATTGGT-GGGCCCAAATGGAAAGGGTAAGTCTACACTGCTCAAGCTT 644
| ||||||||||| ||| | ||||| ||| |||| ||| |||||||||||| | ||||||
Sbjct 663 GTAAAAGGTATGGGTTGATCGGGCC-AAACGGAATGGGAAAGTCTACACTGTTAAAGCTT 721
Query 645 TTGGCATGGAGGAAGATTCCAGTTCCCAAGAATATTGACATTCTTCTTGTTGAGCAAGAG 704
|| || ||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 722 TTAGCTTGGAGGAAGATTCCAGTGCCAAAGAATATTGATGTTCTTCTTGTTGAGCAAGAG 781
Query 705 GTGGTCGGTGATGGAAAGAGTGCTCTGGAAA-CAGTTGTCTCTGCTAATCAAGAGCTGTT 763
||||| ||||||| ||||||||||||| || ||||||||||||| ||| ||||| || |
Sbjct 782 GTGGTTGGTGATGAAAAGAGTGCTCTG-AATGCAGTTGTCTCTGCCAATGAAGAGTTGGT 840
Query 764 TAGGTTAAGGGAAGAAGCTGCAGCTCTGGAGAA 796
|| | || ||||||| |||| ||||||| ||||
Sbjct 841 TAAGCTACGGGAAGAGGCTGAAGCTCTGCAGAA 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108684179925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5