BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930881
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family prote... 1077 0.0
AT2G05720.1 | Symbols: | Transducin/WD40 repeat-like superfami... 564 7e-160
> AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protein
/ small nuclear ribonucleoprotein Prp4p-related | chr2:17304130-17307426
REVERSE LENGTH=2060
Length=2060
Score = 1077 bits (583), Expect = 0.0
Identities = 825/941 (88%), Gaps = 20/941 (2%)
Strand=Plus/Plus
Query 128 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTGTCACGAGATGGAAAAATACTCGCAAC 187
||| ||||||||||||||||| || |||||||| ||||| |||||||| ||||| || ||
Sbjct 962 TGGAGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCAC 1021
Query 188 ATGTTCTCTTAGTGGGGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACAAGATTGA 247
||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1022 ATGTTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGC 1081
Query 248 TGTCTTGAAAGATCACAAAGAACATGCAACTGATGTAGTGTTCTCGCCTGTGGATTATGA 307
||||||||| ||||||||||||| ||||||||||||||||||||| || |||| ||||
Sbjct 1082 TGTCTTGAAGGATCACAAAGAACGTGCAACTGATGTAGTGTTCTCCCCAGTGG---ATGA 1138
Query 308 TTGTCTAGCAACTGCTTCTACTGATCGAACTGCGAAGTTGTGGAATATTGATGGAACACT 367
||||||||| ||||||||| ||||||||||||| ||| ||||||| | ||||||||||||
Sbjct 1139 TTGTCTAGCGACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACT 1198
Query 368 CTTACAAACTTTTAAAGGTCATTTGGATCGGCTTGCACGCATTGCATTCCATCCATCGGG 427
| ||||||| ||| |||||||||||||||| || ||||| |||| ||||| ||||| ||
Sbjct 1199 CCTACAAACGTTTGAAGGTCATTTGGATCGTCTGGCACGTGTTGCTTTCCACCCATCAGG 1258
Query 428 GAAATACCTAGGG-ACAACGAGTTTTGACAAAACATGGAGATTGTGGGATATAAATACAG 486
||||||||| ||| || || || | |||||| || |||||||||||||||||||| ||||
Sbjct 1259 GAAATACCT-GGGAACTACAAGCTATGACAAGACGTGGAGATTGTGGGATATAAACACAG 1317
Query 487 GAATTGAGA-TTCTTTCGCAAGGAGGTCATAGCCGTAGTGTCTACGGAATTGCATTTCAA 545
|| || | | |||| ||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 1318 GAGCAGA-ACTGCTTTTGCAAGAAGGCCATAGCCGCAGTGTCTACGGAATTGCATTTCAA 1376
Query 546 CAAGATGGAGCATTAGTAGCTTCTTC-GGGTTTTGATTCACTTGCACGAGTTTGGGATCT 604
|||||||||||||||| |||||||| ||| || |||||||| |||||||||||||||||
Sbjct 1377 CAAGATGGAGCATTAGCAGCTTCTTGTGGGCTT-GATTCACTCGCACGAGTTTGGGATCT 1435
Query 605 TCGTACTGGTAAGAGTATTCTTGTCTTCCAAGGACATATCAAACCGGTTCTCTCAGTGGA 664
|| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |
Sbjct 1436 CCGCACTGGTAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTTTTCTCCGTGAA 1495
Query 665 TTTTTCTCCTAATGGCTACCATTTGGCATCTGGTGGTGTAG-ATAATCAATGCCGTATTT 723
||| ||||||||||| || || |||||||||||||| | || ||||||||||||||||||
Sbjct 1496 TTTCTCTCCTAATGGTTATCACTTGGCATCTGGTGGGG-AGGATAATCAATGCCGTATTT 1554
Query 724 GGGATCTACGAATGAGAAAGTCGTTATACATTATACCAGCTCATG-TGAACCTTGTTTCT 782
|||||||| ||||||||||||| || ||||||||||||||||||| | |||||||| |||
Sbjct 1555 GGGATCTAAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCT-AACCTTGTGTCT 1613
Query 783 CAAGTAAAGTATGAACCACAAGAAGGGTA-TTTCTTGGCTACTGCCTCATACGACATGAA 841
||||| |||||||| ||||||||||| || ||||| ||| ||||||||||||||||||||
Sbjct 1614 CAAGTGAAGTATGAGCCACAAGAAGGCTACTTTCT-GGCCACTGCCTCATACGACATGAA 1672
Query 842 AGTTAATATATGGTCAGGTAGAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTC 901
||| |||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||
Sbjct 1673 AGTCAATATATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTC 1732
Query 902 CAAAGTCTCATCTCTAGATATCGCT-CTAGATAGCTCATGTATCGCAAGTGTTTCGCATG 960
|||||| | |||||||||||| | | ||||||||| |||||||| | ||| || ||||
Sbjct 1733 AAAAGTCGCCTCTCTAGATATCACAGC-AGATAGCTCGTGTATCGCTACTGTATCACATG 1791
Query 961 ACCGCACCATCAAGCTTTGGACAAGCAGTGGGAATGATGA--A-GACAAAGGGAGAGAAA 1017
| |||||||||||||| |||||||||||||| |||||||| | ||| ||| || |||||
Sbjct 1792 ATCGCACCATCAAGCTATGGACAAGCAGTGGAAATGATGATGAAGACGAAGAGAAAGAAA 1851
Query 1018 CAATGGACATAGAGCTCTAGTTTCtttttttATATTTGTGC 1058
||||||||||||| |||||||||| ||||| || |||||||
Sbjct 1852 CAATGGACATAGATCTCTAGTTTCATTTTTCATGTTTGTGC 1892
> AT2G05720.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:2147192-2148215 FORWARD LENGTH=831
Length=831
Score = 564 bits (305), Expect = 7e-160
Identities = 369/400 (92%), Gaps = 4/400 (1%)
Strand=Plus/Plus
Query 563 AGCTTCTTCGGGTTTTGATTCACTTGCACGAGTTTGGGATCTTCGTACTGG-TAAGAGTA 621
||||||||||||||||||||| |||||| ||||||||||||||||||| || || || ||
Sbjct 435 AGCTTCTTCGGGTTTTGATTCGCTTGCAAGAGTTTGGGATCTTCGTAC-GGCTAGGAATA 493
Query 622 TTCTTGTCTTCCAAGGACATATCAAACCGGTTCTCTCAGTGGATTTTTCTCCTAATGGCT 681
||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |
Sbjct 494 TTCTTATCTTCCAAGGACATATCAAACAGGTTCTCTCGGTGGATTTCTCTCCTAATGGTT 553
Query 682 ACCATTTGGCATCTGGTGGTGTAGATAATCAATGCCGTATTTGGGATCTACGAATGAGAA 741
| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 554 ATCATTTGGCATCTGGTGGTGAAGATAATCAATGCCGTATTTGGGATCTACGGATGAGAA 613
Query 742 AGTCGTTATACATTATACCAGCTCATGTGAACCTTGTTTCTCAAGTAAAGTATGAACCAC 801
||| ||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 614 AGTTGTTGTATATTATACCAGCTCATGTGAACCTCGTTTCTCAAGTAAAGTACGAACCAC 673
Query 802 AAGAAGGGTATTTCTTGGCTACTGCCTCATACGACATGAAAGTTAATATATGGTCAGGTA 861
||||| | |||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 674 AAGAACGCTATTTCCTGGCTACTGCCTCACACGACATGAACGTTAATATATGGTCAGGTA 733
Query 862 GAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTCCAAAGTCTCATCTCTAGATA 921
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 734 GAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTCAAAAGTCGCATCTCTTGATA 793
Query 922 TCGCTCTAGATAGCTCATGTATCGCAAGTGTTTCGCATGA 961
||||| |||||||||| || |||||||||||||||||||
Sbjct 794 TCGCTGTAGATAGCTC--GTCTCGCAAGTGTTTCGCATGA 831
Score = 359 bits (194), Expect = 3e-98
Identities = 238/259 (92%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 128 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTGTCACGAGATGGAAAAATACTCG-CAA 186
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 180 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTATCACGAGATGGAAAAATACTCGTCA- 238
Query 187 CATGTTCTCTTAGTGGGGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACAAGATTG 246
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 239 CATGTTCTCTTAGTGGGGTTCCTAAATTGTGGGAGGTGCCTCAAGTTACAAACAAGATTG 298
Query 247 ATGTCTTGAAAGATCACAAAGAACATGCAACTGATGTAGTGTTCTCGCCTGTGGATTATG 306
||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 299 TTGTCTTGAAAGGTCATAAAGAACATGTAACTGATGTAGTGTTCTCGTCTGTGGATGATG 358
Query 307 ATTGTCTAGCAACTGCTTCTACTGATCGAACTGCGAAGTTGTGGAATATTGATGGAACAC 366
| ||||||||||||||||||||||||||||||| ||| | ||||| | ||||||||||
Sbjct 359 AATGTCTAGCAACTGCTTCTACTGATCGAACTGAAAAGATATGGAAAACGGATGGAACAC 418
Query 367 T-CTTACAAACTTTTAAAG 384
| || ||||||||||||||
Sbjct 419 TTCT-ACAAACTTTTAAAG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5