BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930881 Length=1059 Score E Sequences producing significant alignments: (Bits) Value AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family prote... 1077 0.0 AT2G05720.1 | Symbols: | Transducin/WD40 repeat-like superfami... 564 7e-160 > AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | chr2:17304130-17307426 REVERSE LENGTH=2060 Length=2060 Score = 1077 bits (583), Expect = 0.0 Identities = 825/941 (88%), Gaps = 20/941 (2%) Strand=Plus/Plus Query 128 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTGTCACGAGATGGAAAAATACTCGCAAC 187 ||| ||||||||||||||||| || |||||||| ||||| |||||||| ||||| || || Sbjct 962 TGGAGATGATCGTCCTCTTACCGGCTGCTCCTTCTCACGCGATGGAAAGATACTTGCCAC 1021 Query 188 ATGTTCTCTTAGTGGGGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACAAGATTGA 247 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1022 ATGTTCTCTGAGTGGAGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACACGATTGC 1081 Query 248 TGTCTTGAAAGATCACAAAGAACATGCAACTGATGTAGTGTTCTCGCCTGTGGATTATGA 307 ||||||||| ||||||||||||| ||||||||||||||||||||| || |||| |||| Sbjct 1082 TGTCTTGAAGGATCACAAAGAACGTGCAACTGATGTAGTGTTCTCCCCAGTGG---ATGA 1138 Query 308 TTGTCTAGCAACTGCTTCTACTGATCGAACTGCGAAGTTGTGGAATATTGATGGAACACT 367 ||||||||| ||||||||| ||||||||||||| ||| ||||||| | |||||||||||| Sbjct 1139 TTGTCTAGCGACTGCTTCTGCTGATCGAACTGCAAAGCTGTGGAAAACTGATGGAACACT 1198 Query 368 CTTACAAACTTTTAAAGGTCATTTGGATCGGCTTGCACGCATTGCATTCCATCCATCGGG 427 | ||||||| ||| |||||||||||||||| || ||||| |||| ||||| ||||| || Sbjct 1199 CCTACAAACGTTTGAAGGTCATTTGGATCGTCTGGCACGTGTTGCTTTCCACCCATCAGG 1258 Query 428 GAAATACCTAGGG-ACAACGAGTTTTGACAAAACATGGAGATTGTGGGATATAAATACAG 486 ||||||||| ||| || || || | |||||| || |||||||||||||||||||| |||| Sbjct 1259 GAAATACCT-GGGAACTACAAGCTATGACAAGACGTGGAGATTGTGGGATATAAACACAG 1317 Query 487 GAATTGAGA-TTCTTTCGCAAGGAGGTCATAGCCGTAGTGTCTACGGAATTGCATTTCAA 545 || || | | |||| ||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 1318 GAGCAGA-ACTGCTTTTGCAAGAAGGCCATAGCCGCAGTGTCTACGGAATTGCATTTCAA 1376 Query 546 CAAGATGGAGCATTAGTAGCTTCTTC-GGGTTTTGATTCACTTGCACGAGTTTGGGATCT 604 |||||||||||||||| |||||||| ||| || |||||||| ||||||||||||||||| Sbjct 1377 CAAGATGGAGCATTAGCAGCTTCTTGTGGGCTT-GATTCACTCGCACGAGTTTGGGATCT 1435 Query 605 TCGTACTGGTAAGAGTATTCTTGTCTTCCAAGGACATATCAAACCGGTTCTCTCAGTGGA 664 || ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| | Sbjct 1436 CCGCACTGGTAGGAGTATTCTTGTCTTCCAAGGACACATCAAACCGGTTTTCTCCGTGAA 1495 Query 665 TTTTTCTCCTAATGGCTACCATTTGGCATCTGGTGGTGTAG-ATAATCAATGCCGTATTT 723 ||| ||||||||||| || || |||||||||||||| | || |||||||||||||||||| Sbjct 1496 TTTCTCTCCTAATGGTTATCACTTGGCATCTGGTGGGG-AGGATAATCAATGCCGTATTT 1554 Query 724 GGGATCTACGAATGAGAAAGTCGTTATACATTATACCAGCTCATG-TGAACCTTGTTTCT 782 |||||||| ||||||||||||| || ||||||||||||||||||| | |||||||| ||| Sbjct 1555 GGGATCTAAGAATGAGAAAGTCATTGTACATTATACCAGCTCATGCT-AACCTTGTGTCT 1613 Query 783 CAAGTAAAGTATGAACCACAAGAAGGGTA-TTTCTTGGCTACTGCCTCATACGACATGAA 841 ||||| |||||||| ||||||||||| || ||||| ||| |||||||||||||||||||| Sbjct 1614 CAAGTGAAGTATGAGCCACAAGAAGGCTACTTTCT-GGCCACTGCCTCATACGACATGAA 1672 Query 842 AGTTAATATATGGTCAGGTAGAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTC 901 ||| |||||||||||||| |||||||||||||| ||||||||||||| ||| |||||||| Sbjct 1673 AGTCAATATATGGTCAGGAAGAGATTTCTCGCTCGTTAAAAGCTTAGCAGGGCATGAGTC 1732 Query 902 CAAAGTCTCATCTCTAGATATCGCT-CTAGATAGCTCATGTATCGCAAGTGTTTCGCATG 960 |||||| | |||||||||||| | | ||||||||| |||||||| | ||| || |||| Sbjct 1733 AAAAGTCGCCTCTCTAGATATCACAGC-AGATAGCTCGTGTATCGCTACTGTATCACATG 1791 Query 961 ACCGCACCATCAAGCTTTGGACAAGCAGTGGGAATGATGA--A-GACAAAGGGAGAGAAA 1017 | |||||||||||||| |||||||||||||| |||||||| | ||| ||| || ||||| Sbjct 1792 ATCGCACCATCAAGCTATGGACAAGCAGTGGAAATGATGATGAAGACGAAGAGAAAGAAA 1851 Query 1018 CAATGGACATAGAGCTCTAGTTTCtttttttATATTTGTGC 1058 ||||||||||||| |||||||||| ||||| || ||||||| Sbjct 1852 CAATGGACATAGATCTCTAGTTTCATTTTTCATGTTTGTGC 1892 > AT2G05720.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:2147192-2148215 FORWARD LENGTH=831 Length=831 Score = 564 bits (305), Expect = 7e-160 Identities = 369/400 (92%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 563 AGCTTCTTCGGGTTTTGATTCACTTGCACGAGTTTGGGATCTTCGTACTGG-TAAGAGTA 621 ||||||||||||||||||||| |||||| ||||||||||||||||||| || || || || Sbjct 435 AGCTTCTTCGGGTTTTGATTCGCTTGCAAGAGTTTGGGATCTTCGTAC-GGCTAGGAATA 493 Query 622 TTCTTGTCTTCCAAGGACATATCAAACCGGTTCTCTCAGTGGATTTTTCTCCTAATGGCT 681 ||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||| | Sbjct 494 TTCTTATCTTCCAAGGACATATCAAACAGGTTCTCTCGGTGGATTTCTCTCCTAATGGTT 553 Query 682 ACCATTTGGCATCTGGTGGTGTAGATAATCAATGCCGTATTTGGGATCTACGAATGAGAA 741 | ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 554 ATCATTTGGCATCTGGTGGTGAAGATAATCAATGCCGTATTTGGGATCTACGGATGAGAA 613 Query 742 AGTCGTTATACATTATACCAGCTCATGTGAACCTTGTTTCTCAAGTAAAGTATGAACCAC 801 ||| ||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 614 AGTTGTTGTATATTATACCAGCTCATGTGAACCTCGTTTCTCAAGTAAAGTACGAACCAC 673 Query 802 AAGAAGGGTATTTCTTGGCTACTGCCTCATACGACATGAAAGTTAATATATGGTCAGGTA 861 ||||| | |||||| |||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 674 AAGAACGCTATTTCCTGGCTACTGCCTCACACGACATGAACGTTAATATATGGTCAGGTA 733 Query 862 GAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTCCAAAGTCTCATCTCTAGATA 921 |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| Sbjct 734 GAGATTTCTCGCTTGTTAAAAGCTTAGTAGGACATGAGTCAAAAGTCGCATCTCTTGATA 793 Query 922 TCGCTCTAGATAGCTCATGTATCGCAAGTGTTTCGCATGA 961 ||||| |||||||||| || ||||||||||||||||||| Sbjct 794 TCGCTGTAGATAGCTC--GTCTCGCAAGTGTTTCGCATGA 831 Score = 359 bits (194), Expect = 3e-98 Identities = 238/259 (92%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 128 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTGTCACGAGATGGAAAAATACTCG-CAA 186 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 180 TGGGGATGATCGTCCTCTTACTGGTTGCTCCTTATCACGAGATGGAAAAATACTCGTCA- 238 Query 187 CATGTTCTCTTAGTGGGGTTACTAAATTGTGGGAGATGCCTCAAGTTACAAACAAGATTG 246 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 239 CATGTTCTCTTAGTGGGGTTCCTAAATTGTGGGAGGTGCCTCAAGTTACAAACAAGATTG 298 Query 247 ATGTCTTGAAAGATCACAAAGAACATGCAACTGATGTAGTGTTCTCGCCTGTGGATTATG 306 ||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||| ||| Sbjct 299 TTGTCTTGAAAGGTCATAAAGAACATGTAACTGATGTAGTGTTCTCGTCTGTGGATGATG 358 Query 307 ATTGTCTAGCAACTGCTTCTACTGATCGAACTGCGAAGTTGTGGAATATTGATGGAACAC 366 | ||||||||||||||||||||||||||||||| ||| | ||||| | |||||||||| Sbjct 359 AATGTCTAGCAACTGCTTCTACTGATCGAACTGAAAAGATATGGAAAACGGATGGAACAC 418 Query 367 T-CTTACAAACTTTTAAAG 384 | || |||||||||||||| Sbjct 419 TTCT-ACAAACTTTTAAAG 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51857162985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5