BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930885

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G10260.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   167    1e-40


> AT2G10260.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; BEST Arabidopsis thaliana protein 
match is: Ulp1 protease family protein (TAIR:AT5G45570.1); 
Has 598 Blast hits to 556 proteins in 152 species: Archae - 
0; Bacteria - 266; Metazoa - 60; Fungi - 10; Plants - 112; 
Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). | 
chr2:3938527-3941240 FORWARD LENGTH=1644
Length=1644

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 328/435 (75%), Gaps = 48/435 (11%)
 Strand=Plus/Plus

Query  33   AACT-GAAGAAAACATGTACCCTCAATGGAGTAATGCGGAGGAGGATAAGGATCCAGCA-  90
            |||| ||| | |||||||||| |||||||||| |||| || || |||||||||   | | 
Sbjct  411  AACTCGAA-AGAACATGTACCTTCAATGGAGTGATGCAGAAGAAGATAAGGAT-GTGAAG  468

Query  91   CTAGACAACTTGATAAAAGACATCATCCATAATCGA-TTGGCTTTAGATGCTTGGAAAGG  149
            || |||||||||||||||||||||||||||||||   ||| |||||||||||||||||| 
Sbjct  469  CTTGACAACTTGATAAAAGACATCATCCATAATCTTCTTG-CTTTAGATGCTTGGAAAGA  527

Query  150  TGTGCTAGC-TTTTGG-TGTGTCTAAGAACAAACGCAAAGTAAAAGCTACTGTTGAT-GA  206
            ||||| ||  |||||  | || ||||||  |||  ||||  |   |||| ||| | | | 
Sbjct  528  TGTGCAAGTATTTTGCAT-TG-CTAAGAGTAAAA-CAAA--A---GCTATTGTGGCTAGC  579

Query  207  AGAAGGTAGTATCACACGGAAGGGgaaa-aagatcaaaaaggctaaattttctggcgaag  265
             |||   |||||||||   ||||||||| ||| | |   ||||  ||| |||     || 
Sbjct  580  -GAA---AGTATCACAATCAAGGGGAAACAAGTT-ATGGAGGCCGAATCTTC-----AA-  628

Query  266  aaagagtcaaaattcaaaaagaagaCGAGAAGATAGTCTCAGAAGATATACAAGTTGATA  325
            || |  | ||||  |||||||    | ||||||||||||||||||||| | | |||||||
Sbjct  629  AA-GT-TGAAAA--CAAAAAG----C-AGAAGATAGTCTCAGAAGATAAAGAGGTTGATA  679

Query  326  AGGATGACAAGAA-AGGCTTCT-CTGATATTTTATTGATGATGGAAAAAA-TGAATGGGA  382
            ||||||| ||||| || ||| | | |||||| ||  | ||||| |||| | |||||| ||
Sbjct  680  AGGATGAGAAGAATAG-CTT-TGCGGATATTCTAAAGGTGATG-AAAACACTGAATGAGA  736

Query  383  GTATTGT-AGACAAGGGTAAGAATCTGAGTAGTAGGATCGATGACT-TGGAGAATACCTT  440
             |||| | ||||  ||| |||||||||||| ||| |||||||| || || ||| ||  ||
Sbjct  737  CTATT-TCAGACGTGGGCAAGAATCTGAGTTGTAAGATCGATG-CTATGCAGACTAGATT  794

Query  441  TGACTCACGGATTGT  455
            ||| || | ||||||
Sbjct  795  TGAGTCTCAGATTGT  809



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5