BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930892
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05840.1 | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr... 1314 0.0
AT5G35590.1 | Symbols: PAA1 | proteasome alpha subunit A1 | chr... 839 0.0
> AT2G05840.1 | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234092-2236294
FORWARD LENGTH=1116
Length=1116
Score = 1314 bits (711), Expect = 0.0
Identities = 750/769 (98%), Gaps = 1/769 (0%)
Strand=Plus/Plus
Query 13 AGAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCAC 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCAC 186
Query 73 CGGAAGGTCGTCTCTTCCAAGTAGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCA 132
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 187 CGGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCA 246
Query 133 CATCGATCGGTGTTCGAGGGAAAGATTCAGTATGCGTCGTTACCCAGAAGAAAGTTCCGG 192
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 247 CATCGATCGGTGTCCGAGGGAAAGATTCAGTATGCGTCGTTACGCAGAAGAAAGTTCCGG 306
Query 193 ACAAGCTTCTAGATCAGTCTAGTGTATCTCACCTTTTTCCTGTTACTAAGTACCTTGGAT 252
|||||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 307 ACAAGCTTTTGGATCAGTCTAGTGTATCTCACCTTTTCCCTGTTACCAAGTACCTTGGAT 366
Query 253 TATTAGCCACTGGCATGACAGCTGATTCAAGGTCGTTGGTACAACAAGCAAGGAATGAGG 312
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 367 TGTTAGCCACTGGCATGACAGCTGATTCAAGGTCATTGGTACAACAAGCTAGGAATGAGG 426
Query 313 CAGCTGAGTTTAGGTTCCAATATGGATACGAGATGCCTGCGGATATTCTTGCTAAATGGA 372
| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 427 CTGCTGAGTTTAGGTTCCAATATGGTTATGAGATGCCTGCAGATATTCTTGCTAAATGGA 486
Query 373 TTGCAGATAAGTCACAGGTTTACACTCAACATGCTTATATGAGACCCCTTGGAGTAGTTG 432
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 487 TTGCAGATAAGTCTCAGGTTTACACACAACATGCTTACATGAGACCCCTTGGAGTAGTTG 546
Query 433 CCATGGTTCTGGGTATTGATGAAGAGAGAGGACCTCTACTTTACAAGTGTGACCCAGCTG 492
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CCATGGTTCTAGGTATTGATGAAGAGAGAGGACCTCTACTTTACAAGTGTGACCCAGCTG 606
Query 493 GACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATT 666
Query 553 TCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTACAGACTG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTACAGACTG 726
Query 613 CTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGGTGG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGGTGG 786
Query 673 GAGTTGTGAGAGCTGATGACCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGACGAGC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GAGTTGTGAGAGCTGATGACCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGACGAGC 846
Query 733 ACTTGACGGCCATTAGTGAACGTGACTGATCACTTTTCACTGGAACATT 781
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 847 ACTTGACGGCCATTAGTGAACGTGACTGATCACTTT-CACTGGAACATT 894
> AT5G35590.1 | Symbols: PAA1 | proteasome alpha subunit A1 | chr5:13765138-13767823
REVERSE LENGTH=1075
Length=1075
Score = 839 bits (454), Expect = 0.0
Identities = 661/761 (87%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 14 GAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCACC 73
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 49 GAAGAAGATGAGTAGAGGAAGCGGCGCTGGTTATGATCGTCACATCACTATCTTCTCACC 108
Query 74 GGAAGGTCGTCTCTTCCAAGTAGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCAC 133
||||||||||||||| ||||| || ||||| ||||| ||||||||| ||||||| || ||
Sbjct 109 GGAAGGTCGTCTCTTTCAAGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTAC 168
Query 134 ATCGATCGGTGTTCGAGGGAAAGATTCAGTATGCGTCGTTACCCAGAAGAAAGTTCCGGA 193
|| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 169 TTCAATCGGAGTTCGTGGGAAAGATTCGGTTTGCGTCGTTACCCAGAAGAAAGTTCCTGA 228
Query 194 CAAGCTTCTAGATCAGTCTAGTG-TATCTCACCTTTTTCCTGTTACTAAGTACCTTGGAT 252
||||||| | ||||||||||||| || | || || || ||| | || |||||| ||||||
Sbjct 229 CAAGCTTTTGGATCAGTCTAGTGTTA-CACATCTGTTCCCTATCACCAAGTACATTGGAT 287
Query 253 TATTAGCCACTGGCATGACAGCTGATTCAAGGTCGTTGGTACAACAAGCAAGGAATGAGG 312
| |||| |||||||| ||||||||| ||||||| ||||| ||||||||||||||| | |
Sbjct 288 TGGTAGCTACTGGCATTACAGCTGATGCAAGGTCTTTGGTTCAACAAGCAAGGAATCAAG 347
Query 313 CAGCTGAGTTTAGGTTCCA-ATATGGATACGAGATGCCTGCGGATATTCTTGCTAAATGG 371
||||||| ||| |||| || |||||||| |||||||||| || |||||||||||||||
Sbjct 348 CAGCTGAATTTCGGTT-CACTTATGGATATGAGATGCCTGTTGACATTCTTGCTAAATGG 406
Query 372 ATTGCAGATAAGTCACAGGTTTACACTCAACATGCTTATATGAGACCCCTTGGAGTAGTT 431
|| || || ||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 407 ATAGCGGACAAGTCACAGGTCTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGTC 466
Query 432 GCCATGGTTCTGGGTATTGATGAAGAGAGA-GG-ACCTCTACTTTACAAGTGTGACCCAG 489
|| ||||| ||||| |||||||||||| | || ||| |||||||||| ||||||||||
Sbjct 467 GCTATGGTAATGGGTGTTGATGAAGAGA-ATGGTCCCT-TACTTTACAAATGTGACCCAG 524
Query 490 CTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCA 549
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 CTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAGGAACAAGAAGCAGTCA 584
Query 550 ATTTCTTGGAGAAGAAAATGAAAGAAAACCC-TGCCTTCACATATGATGAAACAGTACAG 608
||||||||||||||||||||||||||||||| | | ||||||| ||||||||| || |||
Sbjct 585 ATTTCTTGGAGAAGAAAATGAAAGAAAACCCAT-CTTTCACATTTGATGAAACCGTGCAG 643
Query 609 ACTGCTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAG 668
||||| ||||| ||| | |||||||||||||||||||||||||| || ||||| ||||||
Sbjct 644 ACTGCCATATCGGCTTTGCAATCTGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAG 703
Query 669 GTGGGAGTTGTGAGAGCTGATGA-CCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGA 727
|| || || |||||||| || || ||| |||||| | ||| ||| |||||||| ||
Sbjct 704 GTAGGTGTGGTGAGAGCAGA-GAACCCGGAATTCCGTGCATTGACAACGGAGGAGATTGA 762
Query 728 CGAGCACTTGACGGCCATTAGTGAACGTGACTGATCA-CTT 767
||||| ||||| |||||||||||||| ||||||||| |||
Sbjct 763 GGAGCATTTGACAGCCATTAGTGAACGAGACTGATCAACTT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5