BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930902
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05940.1 | Symbols: | Protein kinase superfamily protein | ... 2150 0.0
AT5G35580.1 | Symbols: | Protein kinase superfamily protein | ... 773 0.0
AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:1... 154 2e-36
> AT2G05940.1 | Symbols: | Protein kinase superfamily protein
| chr2:2287238-2289307 REVERSE LENGTH=1702
Length=1702
Score = 2150 bits (1164), Expect = 0.0
Identities = 1372/1466 (94%), Gaps = 39/1466 (3%)
Strand=Plus/Plus
Query 1 AAAAGAAACAC-AAAT---CAACAATGGCGGTGAAGAAGAAAGTTTCATGGAGATCATTA 56
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 14 AAAAGAAACACAAAATCAACAACAATGGCGGTGAAGAAGAAAGTTTCATGGAGATCACTA 73
Query 57 ATCGTTGGATGTTTAGGAGATCCAGAAACCCTAGTGGCTTCTTCAAAGAAACCTAAAAGA 116
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 74 ATCGTTGGATGTTTAGGAGATCCAGAAACCCTAATGGCATCTTCAAAGAAACCTAAAAGA 133
Query 117 AAAGATGACGTCATCAAGAAACAGAGCTCTTTTCAAAGACTATCGATTCTTGATATGAGC 176
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 134 AAAAATGACGTCATCAAGAAACAGAGCTCTTTTCAAAGACTATCGATACTTGATATGAGC 193
Query 177 AATCCAAGTTCCAACACTTTATCAGAAGATCTATCGATTTCTTTGGCCGGATCAGATCTC 236
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 194 AATCCAAGTTCCAACACTTTGTCAGAAGATCTATCGATTTCTTTGGCCGGATCAGATCTT 253
Query 237 CATGTGTTTACCCTAGCAGAGCTTAAAGTCATTACACAAAGCTTTTCATCGACTAATTTC 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 254 CATGTGTTTACCCTAGCGGAGCTTAAAGTCATTACACAAAGCTTTTCATCGACCAATTTT 313
Query 297 CTCGGTGAAGGAGGGTTTGGTCCTGTTCATAAGGGTTTCATCGATGATAAGCTACGTCCT 356
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 314 CTAGGTGAAGGTGGGTTTGGTCCTGTTCATAAGGGTTTCATTGATGATAAGCTACGTCCT 373
Query 357 GGTCTTAAAGCTCAGCCTGTTGCTGTTAAATTGCTTGATCTTGAAGGTCTTCAAGGTCAC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGTCTTAAAGCTCAGCCTGTTGCTGTTAAATTGCTTGATCTTGAAGGTCTTCAAGGTCAC 433
Query 417 CGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATTGAAGCATAAAAACTTGGTGAAA 476
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 434 CGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAATTGAAGCACAAAAATTTGGTGAAA 493
Query 477 TTGATTGGTTATTGTTGTGAGGAAGAACATAGAACTCTTGTTTATGAGTTCATGCCTCGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TTGATTGGTTATTGTTGTGAGGAAGAACATAGAACTCTTGTTTATGAGTTCATGCCTCGT 553
Query 537 GGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTGCCTCGCTTCCATGGTCAACAAGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GGAAGCTTAGAGAATCAACTTTTCAGAAGATACTCTGCCTCGCTTCCATGGTCAACAAGA 613
Query 597 ATGAAGATCGCTCATGGAGCTGCAACAGGACTTCAATT-CTTACACGAAGCCGAAAATCC 655
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 614 ATGAAGATCGCTCATGGAGCTGCAACAGGACTTCAATTTCT-ACACGAAGCTGAAAATCC 672
Query 656 CGTTATCTATCGGGATTTCAAAGCCTCGAATATCTTGTTAGATTCGGATTACACGGCGAA 715
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 673 TGTTATCTATCGGGATTTCAAAGCCTCCAATATCTTGTTAGATTCCGATTACACGGCGAA 732
Query 716 ACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGAGACGACACTCACGTGTCAAC 775
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 733 ACTCTCTGACTTCGGGTTAGCCAAAGACGGACCAGAAGGAGACGACACTCATGTGTCAAC 792
Query 776 GCGAGTGATGGGCACACAAGGCTACGCGGCTCCTGAATACATCATGACCGGTCATTTAAC 835
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 793 TCGAGTGATGGGCACACAAGGCTACGCAGCTCCTGAATACATCATGACCGGTCATTTAAC 852
Query 836 AGCAAGAAGTGACGTGTACAGCTTCGGAGTCGTGTTGCTCGAGCTTTTGACTGGACGAAG 895
||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||| ||
Sbjct 853 AGCAAGAAGTGACGTATACAGCTTTGGAGTTGTGTTGCTAGAGCTTTTGACCGGACGGAG 912
Query 896 ATCAGTAGACAAAAAGAGATCATCGAGGGAACAGAACCTAGTGGACTGGGCTCGTCCAAT 955
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 913 ATCAGTAGACAAAAAGAGATCATCGAGGGAACAAAACCTTGTGGACTGGGCTCGTCCAAT 972
Query 956 GCTCAATGACCCACGTAAACTATGTCGAATCATGGACCCGAGACTTGAAGGTCAGTACTC 1015
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 973 GCTCAATGACCCACGTAAACTATCTCGAATCATGGACCCGAGACTTGAAGGTCAGTACTC 1032
Query 1016 AGAGACAGGAGCAAGAAAAGCAGCAACATTGGCTTACCAATGTTTAAGCCACCGACCCAA 1075
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1033 AGAGACAGGAGCAAGAAAAGCAGCAACATTGGCTTACCAATGCTTAAGCCATCGACCCAA 1092
Query 1076 GAACCGGCCTTGTATGAGTGCCGTCGTCTCTATACTCAATGATCTTAAGGACTATAATGA 1135
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1093 GAACCGGCCATGTATGAGTGCCGTCGTCTCTATACTCAATGATCTTAAAGACTATAATGA 1152
Query 1136 TATTACTATGGGGACATTCACTTACACGGTGCCAAACACTCCGGACAAGTCAGTCTCGGA 1195
|||| |||||||||| |||||||||||||||||||||||||||||||| | | |
Sbjct 1153 TATTCCTATGGGGACTTTCACTTACACGGTGCCAAACACTCCGGACAA-T-A-------A 1203
Query 1196 CAATAAAGAAGATGAAGGTCGTGTTGGTAATAAGCCACGTAAGAGTAGTCATCATCATCA 1255
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 -A-----GAAGATGATGGTCGTGTTGGTAATAAGCCACGTAAGAGTAGTCATCATCATCA 1257
Query 1256 TCAACAACAAAGTAATCATCCCCGGTCGTCACCATCACCAATGGCCAAGTCTCCATCGCC 1315
||| |||||| || || | | ||| | | || || | ||||||||| ||
Sbjct 1258 TCATCAACAAC--AA-CAAA---G-TAATCATC--C-CC---GGTC--GTCTCCATCTCC 1302
Query 1316 GACGACCAAGTCGCCATCTCCCACGGCCAAGTCGCCGAGGAATTCCA-GAGAAAACCACC 1374
||| |||||||| |||||||||||||||||||||||||||||||| | | ||||| ||||
Sbjct 1303 GACAACCAAGTCTCCATCTCCCACGGCCAAGTCGCCGAGGAATTCAACG-GAAAATCACC 1361
Query 1375 GGAGAACATTGAGAAATGGAGTGAATTCGCCGTTGAGAAGTGAGGCAGGTGGGGAACGGT 1434
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GGAGAACGTTGAGAAATGGAGTGAATTCGCCGTTGAGAAGTGAGGCAGGTGGGGAACGGT 1421
Query 1435 ACTGAGTTTT-CTAGTCTCACCTACT 1459
||| |||||| |||||| |||| |||
Sbjct 1422 ACTAAGTTTTTCTAGTCACACCAACT 1447
> AT5G35580.1 | Symbols: | Protein kinase superfamily protein
| chr5:13761965-13763944 FORWARD LENGTH=1593
Length=1593
Score = 773 bits (418), Expect = 0.0
Identities = 768/935 (82%), Gaps = 32/935 (3%)
Strand=Plus/Plus
Query 159 TCGATTCTTGATATGAGCAATCCAAGTTCCAAC-ACTTTATCAGAAGATCTATCGATTTC 217
|||||||| || || || |||||||||||| || || || || |||||||| || || ||
Sbjct 121 TCGATTCTAGACATAAGTAATCCAAGTTCC-ACTACCTTGTCCGAAGATCTCTCAATCTC 179
Query 218 TTTGGCCGGATCAGATCTCCATGTGTTTACCCTAGCAGAGCTTAAAGTCATTACACAAAG 277
| ||||| || |||||||| ||||| || | ||||||||||| |||||| ||||||||
Sbjct 180 CCTCGCCGGCTCGGATCTCCACGTGTTCACACAAGCAGAGCTTAGAGTCATAACACAAAG 239
Query 278 CTTTTCATCGA-CTAA-TTTCCTCGGTGAAGGAGGGTTTGGTCCTGTTCAT-AAGGGTTT 334
||| || || | | || ||| || |||||||||||||||||||| |||||| ||||| ||
Sbjct 240 CTTCTCTTCTAGC-AACTTT-CTTGGTGAAGGAGGGTTTGGTCCGGTTCATAAAGGG-TT 296
Query 335 CATCGATGATAAGCTACGTCCTGGTCTTAAAGCTCAGCCTGTTGCTGTTAAA-TTGCTTG 393
||||||||| ||||| |||||||||||||| |||||||| ||||| |||||| || ||||
Sbjct 297 CATCGATGACAAGCTCCGTCCTGGTCTTAAGGCTCAGCCCGTTGCCGTTAAACTT-CTTG 355
Query 394 ATCTTGAAGGTCTTCAAGGTCACCGTGAATGGCTGACGGAAGTTATGTTTTTGGGACAAT 453
||||||| |||||||||||||||||||| | ||||||| ||||||| ||||||| ||
Sbjct 356 ATCTTGATGGTCTTCAAGGTCACCGTGAGTTTATGACGGAGGTTATGTGTTTGGGAAAAC 415
Query 454 TGAAGCAT-AAAAACTTGGTGAAATTGATTGGTTATTGTTGTGAGGAAGAACATAGAAC- 511
| |||||| || | ||||||| |||| || ||||| || ||||||| |||||| ||
Sbjct 416 TAAAGCATCCGAATC-TGGTGAAGCTGATCGGATATTGCTGCGAGGAAGCACATAG-ACT 473
Query 512 TCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTTTTCAGAAGATACTC 571
|||||||||||||||||||||||||||||| || ||| |||||| |||||||| | |||
Sbjct 474 TCTTGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGTCTCAACTCTTCAGAAGGTGCTC 533
Query 572 TGCCT-C-GCTTCCATGGTCAACAAGAATGAAGATCGCTCATGGAGCTGCAACAGGA-CT 628
||| | ||| |||||| |||| || |||| |||||| ||| |||||||| ||| ||
Sbjct 534 --CCTACCGCTGCCATGGACAACGAGGTTGAACATCGCTTATGAAGCTGCAA-AGGGTCT 590
Query 629 TCAATT-CTTACACGAAGCCGAAAATCCCGTTATCTATCGGGATTTCAAAGCCTCGAATA 687
|| || || ||| |||||||| || ||| | |||||||| |||||||| ||||| ||||
Sbjct 591 ACAGTTTCT-ACATGAAGCCGAGAAGCCCATCATCTATCGCGATTTCAAGGCCTCTAATA 649
Query 688 TCTTGTTAGATTCGGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGAC 747
||||||||||||| ||||| || ||||||||||| ||||||||| |||| ||||||||||
Sbjct 650 TCTTGTTAGATTCTGATTATACAGCGAAACTCTCGGACTTCGGGCTAGCAAAAGACGGAC 709
Query 748 CAGAAGGAGACGACACTCACGTGTCAACGCGAGTGATGGGCACACAAGGCTACGCGGCTC 807
|| |||| || || || || ||||| || || ||||||||||||||||| |||||||| |
Sbjct 710 CACAAGGCGATGATACACATGTGTCGACTCGCGTGATGGGCACACAAGGGTACGCGGCGC 769
Query 808 CTGAATACATCATGACCGGTCATTTAACAGC-AAGAAGTGACGTGTACAGCTTCGGAGTC 866
| || ||||| ||||| ||||||||||| || |||| |||| ||||||||||| |||||
Sbjct 770 CAGAGTACATAATGACAGGTCATTTAACGGCTAAGA-GTGATGTGTACAGCTTTGGAGTG 828
Query 867 GTGTTGCTCGAGCTTTTGACTGGACG-AAGATCAGTAGACAAAAAGAGATCATCGAGGGA 925
|||||||| ||||| ||||| || || || ||| || |||| | ||||||||| || |
Sbjct 829 GTGTTGCTTGAGCTGTTGACAGGTCGGAA-ATCGGTGGACATAGCGAGATCATCAAGA-A 886
Query 926 ACAGAA-CC-TAGTGGACTGGGCTCGTCCAATGCTCAATGACCCACGTAAACTATGTCGA 983
| |||| || | || || |||||||||||||||||||| ||| |||||||||| | ||
Sbjct 887 A-AGAAACCCTCGTTGAGTGGGCTCGTCCAATGCTCAACGACGCACGTAAACTCGGGAGA 945
Query 984 ATCATGGACCCGAGACTTGAAGGTCAGTACTCAGAGACAGGAGCAAGAAAAGCAGCAACA 1043
|| ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||||
Sbjct 946 ATAATGGACCCGAGGCTTGAAGATCAGTACTCAGAGACCGGAGCACGAAAGGCAGCAAC- 1004
Query 1044 T-TGGCTTACCAATGTTTAAGCCACCGACCCAAGA 1077
| | ||||| ||||| |||| ||||||| ||||
Sbjct 1005 TCTAGCTTATCAATGCCTAAGGTACCGACCAAAGA 1039
> AT2G28930.1 | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424775-12426674
FORWARD LENGTH=1563
Length=1563
Score = 154 bits (83), Expect = 2e-36
Identities = 415/568 (73%), Gaps = 52/568 (9%)
Strand=Plus/Plus
Query 408 CAAGGTCACC-GTGAATGGCTGACGGAAGT-TATGTTTTTGGGACAATTGAAGCAT-AAA 464
|||||||||| | ||||||||| ||||||| || | ||||| || || |||| |
Sbjct 558 CAAGGTCACCAG-GAATGGCTGGCGGAAGTGAAT-TACTTGGGGCAGTTTTCGCATCCTA 615
Query 465 AACTTGGTGAAATTGATTGGTTATTG-TTGTGAGGAAGAACATAGAAC-TCTTGTTTATG 522
| ||| |||||| ||||||||||||| || ||||| || ||| | | |||||||||||
Sbjct 616 ATCTT-GTGAAACTGATTGGTTATTGCTT-AGAGGATGAGCATCG-TCTTCTTGTTTATG 672
Query 523 AGTTCATGCCTCGTGGAAGCTTAGAGAATCAACTT-TTCAGAAGATACTCTGCCT--CG- 578
||||||||||||||||||||||||||||||| || ||||||||| ||| | |
Sbjct 673 AGTTCATGCCTCGTGGAAGCTTAGAGAATCAT-TTGTTCAGAAGAGGTTCTTATTTTCAA 731
Query 579 C-TTC--CATGG--TCAACAAGAATGAA-GATCGCTCATGGAGCTGC-AACAGGACTT-C 630
| || | ||| || | | |||| | | |||| ||| || || || ||| ||| |
Sbjct 732 CCTTTATCTTGGACTCTCCG-GT-TGAAAGTT-GCTCTTGGTGCAGCGAA-AGGTCTTGC 787
Query 631 AATTCTTACACGAA-GCCGAAAATCCCGTTATCTATCGGGATTTCAAAGCCTCGAATAT- 688
||||| || || ||||| | | || || || || ||||||||| | ||||||||
Sbjct 788 GTTTCTT-CAT-AACGCCGAGACTAGTGTCATATACCGCGATTTCAAAACGTCGAATATA 845
Query 689 CTTG-TTAGATTCGGATTACACGGCGAAACTCTCTGACTTCGGGTTAGCCAAAGACGGAC 747
|| | || |||||||| |||| || || || ||||| |||||| |||| |||||||| |
Sbjct 846 CT-GCTT-GATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTAGCTAAAGACGGTC 903
Query 748 CAGAAGGA-GACGACA-CTCACGTGTCAACGCG-AGTGATGGGCACACAAGGCTACGCGG 804
|| | || || | | | || || || ||||| | | ||||| || | || ||||| |
Sbjct 904 CA-ACGGGTGATAAAAGC-CATGTCTCTACGCGGA-TCATGGGTACTTACGGATACGCAG 960
Query 805 CTCCTGAATACATCATG-ACC-GGTCATTTAACAGC-AAGAAGTGACGTGTACAGCTTCG 861
|||||||||| || || | | |||||||||||| | || |||||| || || |||| ||
Sbjct 961 CTCCTGAATA--TCTTGCAACTGGTCATTTAACAACCAA-AAGTGATGTCTATAGCTACG 1017
Query 862 GAGTCGTG-TTGCTCGAGCTTTTGACTGGACGAAGATCAGTAGACAAAAAGAGATC-ATC 919
| || ||| || | ||| | ||| ||||||| ||| | |||||||| || | || | |
Sbjct 1018 GTGTTGTGCTTT-TGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCG-TCCACC 1075
Query 920 GAGG-GAACAGAACCTAGTGGACTGGGC 946
||| || || || |||||||| |||||
Sbjct 1076 -AGGAGAGCAAAAGCTAGTGGAATGGGC 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5