BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930903
Length=475
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resist... 505 2e-142
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion trans... 300 9e-81
> AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resistance-associated
macrophage protein 1 | chr1:30372879-30375696
REVERSE LENGTH=1838
Length=1838
Score = 505 bits (273), Expect = 2e-142
Identities = 393/450 (87%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 1 CTTATGCCGGACAATACATAATGCAAAGATTTCTTGACCTAAAACTCAAGCCATGGCTCA 60
||||||| |||||||| ||||||| | |||||||| || | |||| ||||||||||||
Sbjct 1089 CTTATGCTGGACAATATGTAATGCAGGGCTTTCTTGATCTCAGACTCGAGCCATGGCTCA 1148
Query 61 GAAACTTACTAACACGATGTTTAGCTATAATCCCGAGTCTAATCGTTTCTCTCATTGGTG 120
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1149 GAAACTTACTAACAAGATGTTTAGCTATAATCCCGAGTCTAATTGTTGCTCTCATCGGTG 1208
Query 121 GTTCTGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGGTGATCTTGTCCTTTGAGCTCC 180
|||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1209 GTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAGCTCC 1268
Query 181 CGTTCGCGCTGGTTCCCCT-CTTGAAATGT-ACAAGCTGCAAAACCAAGATGGGTTCACA 238
|||| ||| ||||||| || || |||| | ||||| |||||||||||||||||||||||
Sbjct 1269 CGTTTGCGTTGGTTCCTCTTCTC-AAAT-TCACAAGTTGCAAAACCAAGATGGGTTCACA 1326
Query 239 CGTCAACTCAATTTG-GATCACAGCTTTGACTTGGATTATTGGATTACTCA-TCATGGGA 296
|||||| |||| | ||| ||||||||||||||| | ||||| | | | ||||||||
Sbjct 1327 TGTCAACCCAATG-GCGATTACAGCTTTGACTTGGGTCATTGG-TGGTTTAATCATGGGA 1384
Query 297 ATAAACATATACTATATAGTAACCAGTTTCATCAAGCTGCTTCTCCATAGTCATATGATG 356
||||||||||||||| |||||| |||||||||||| |||||| |||| |||||||||| |
Sbjct 1385 ATAAACATATACTATCTAGTAAGCAGTTTCATCAAACTGCTTATCCACAGTCATATGAAG 1444
Query 357 CTTGTCGC-CGTCATCTTCTGTGGAATTCTTGGGTTCGCAGGTATTGCTATCTATTTAGC 415
||| || | |||| |||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1445 CTTATC-CTCGTCGTCTTCTGTGGAATTCTTGGGTTCGCAGGCATTGCTCTCTATTTAGC 1503
Query 416 -GTCCATAGCTTACCTTGTCTTTAGGaaaa 444
| ||||||||||||||||||| ||||||
Sbjct 1504 CG-CCATAGCTTACCTTGTCTTCCGGAAAA 1532
> AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter
6 | chr1:5481665-5485082 REVERSE LENGTH=2137
Length=2137
Score = 300 bits (162), Expect = 9e-81
Identities = 353/443 (80%), Gaps = 22/443 (5%)
Strand=Plus/Plus
Query 3 TATGCCGGACAATACATAATGCAAAGATTTCTTGACCTAAAACTCA-AGCCATGGCTCAG 61
||||| ||||||||| | ||||| | |||||||| ||| ||| | | |||||||||||
Sbjct 1031 TATGCTGGACAATACGTTATGCAGGGGTTTCTTGATTTAAGACT-AGAACCATGGCTCAG 1089
Query 62 AAACTTACTAA-CACGATGTTTAGCTATAATCCCGAGTCTAATCGTTTCTCTCATTGGTG 120
|||||| |||| || |||| || ||||||||||| ||| | |||||| || | || ||||
Sbjct 1090 AAACTTCCTAACCA-GATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTG 1148
Query 121 GTTCTGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGGTGATCTTGTCCTTTGAGCTCC 180
| || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 1149 GCTCAGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAACTCC 1208
Query 181 CGTTCGCGCTGGTTCCC-CT-CTTGAAATGT-ACAAGCTGCAAAACCAAGATGGGTTCAC 237
| || || | || ||| || || |||| | |||||| | |||||||| ||||| ||||
Sbjct 1209 CATTTGCTTTAGT-CCCACTTCTC-AAAT-TCACAAGCAGTAAAACCAAAATGGGCTCAC 1265
Query 238 ACGTCAACTCAATT-TGGATCACAGCTTTGACTTGGATTATTGGATT-ACTCATCATGGG 295
||| ||| ||| || || || || | |||||||||| ||||| | ||| || |||||
Sbjct 1266 ACGCCAATTCACTTGTG-ATTTCATCGGTGACTTGGATAATTGG-TGGACTTATTATGGG 1323
Query 296 AATAAACATATACTATATAGTAACCAGTTTCATCAAGCTGCTTCTCCATAGTCATATGAT 355
|||||||| |||||| | |||| ||| ||||||||| |||||||||||||||| ||||
Sbjct 1324 TATAAACATTTACTATCTTGTAAGCAGCTTCATCAAGTTGCTTCTCCATAGTCACATGAA 1383
Query 356 GCTTGTCGCCGTCATCTTCTGT-GGAATTCTTGGGTTCGCAGGTATTGCTATCT-ATTTA 413
||||| ||| | | |||| | ||| ||||||| ||| |||| ||||| | || | |||
Sbjct 1384 CCTTGTAGCCATTGTTTTCT-TAGGAGTTCTTGGATTCTCAGGCATTGCCA-CTTACTTA 1441
Query 414 GC-GTCCAT-AGCTTACCTTGTC 434
|| | |||| || ||||||||||
Sbjct 1442 GCTG-CCATCAG-TTACCTTGTC 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22605366150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5