BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930907
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2444 0.0
> AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:2327635-2329691 REVERSE LENGTH=2057
Length=2057
Score = 2444 bits (1323), Expect = 0.0
Identities = 1550/1661 (93%), Gaps = 10/1661 (1%)
Strand=Plus/Plus
Query 1 CCGCCGCCGATTTTCTCACGCCGTTATGATTCGAACAACATTCGCCACCGCCATCGCTCA 60
||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 57 CCGCCGCCGATATTCTCACGCCGGTATGATTCGAACAACATTCGCGACCGCCATCGCTCA 116
Query 61 TTTCCACACCCATTCTCATGGAGGAGCTCAAGCTCGTCCTATACAGAACAATACGCGAGA 120
||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 117 TTTCCACACGCATTCTCATGGAGGAGCTCAAGCTCGTCCTCTACAGAACAACACACGAGA 176
Query 121 AAAAATCCATTGTCCTGAAGCTTGGTTAGTCAAAATCGTATCTACTTTGTTCGTCTACAG 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 177 AGTAATCCATTGTCCTGAAGCTTGGTTAGTCAAAATCGTATCTACTTTGTTCGTGTACAG 236
Query 181 AGTTCCAGATTCAGATCTCTGTTTCTGTTACTTAAGCAAGAATCTGAATCCGTTTATCTC 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 237 AGTTCCAGATTCAGATCTCTGTTTCTGTTACTTAAGCAAGAATCTAAATCCGTTTATCTC 296
Query 241 CTTTGAGGTTGTGAAGAAATTGGATAATAATCCTCACATAGGGTTTCGATTTTGGGAGTT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 CTTTGAGGTTGTGAAGAAATTGGATAACAATCCTCACATAGGGTTTCGATTTTGGGAGTT 356
Query 301 TAGTAGATTCAAATTGAATATTCGTCATTCGTTTTGGACTTATAATTTGCTTACGAGATC 360
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 TAGTAGATTCAAATTGAACATTCGTCATTCGTTTTGGACTTATAATTTGCTAACGAGATC 416
Query 361 GCTTTGTAAAGCCGGTATGCACGATTTAGCGGGTCAGATGTTTGAGTGTATGAAGAGCGA 420
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 TCTTTGTAAAGCCGGTTTGCACGATTTAGCCGGTCAGATGTTTGAGTGTATGAAGAGCGA 476
Query 421 TGGGATTTCTCCGAATAGTCGGTTATTAGGGTTTTTGGTGTCTTCATTTGCTGA-AAAGG 479
|||| |||||||||||| ||||||||||||||| || |||||||| |||||||| ||| |
Sbjct 477 TGGGGTTTCTCCGAATAATCGGTTATTAGGGTTCTTAGTGTCTTCGTTTGCTGAGAAA-G 535
Query 480 GTAAGCTACATTGT-GCTACTGCATTGCTTCTACAGTCTTATGAGGTTGAAGGATGTTGT 538
||||||| |||| | |||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 536 GTAAGCTCCATT-TCGCTACTGCGTTGCTTCTTCAGTCTTTTGAGGTTGAAGGATGTTGT 594
Query 539 ATGGTGGTGAATAGTTTGTTGAATACGTTAGTGAAGTTGGATCGTGTGGAAGATGCGATG 598
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 595 ATGGTGGTGAATAGTTTGTTGAATACTTTGGTGAAGTTGGATCGTGTGGAAGATGCGATG 654
Query 599 AAGCTTTTTGAGGAACATTTGAGATTTCAGTCTTGTAATGATACTAAGACCTTTAACATT 658
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 655 AAGCTTTTTGATGAACATTTGAGATTTCAGTCTTGTAATGATACAAAGACGTTTAACATT 714
Query 659 TTGATTCGAGGTTTGTGTGGTGT-GGGAAAAGCAGAGAAAGCGGTAGAGCTTTTGGGTGG 717
||||||||||||||||| || || ||| ||||| ||||||||| |||||||||||||||
Sbjct 715 TTGATTCGAGGTTTGTGCGGCGTAGGG-AAAGCGGAGAAAGCGTTAGAGCTTTTGGGTGT 773
Query 718 GATGAGTGGTTTTGGTTGTTTA-CCTGACATTATTACGTATAATACTCTTATTAAGGGGT 776
|||||||||||||||||| | | ||||||||| |||||||||||||||||||| ||||||
Sbjct 774 GATGAGTGGTTTTGGTTG-TGAGCCTGACATTGTTACGTATAATACTCTTATTCAGGGGT 832
Query 777 TTTGCAAGAGTAATGAGCTAAAGAAAGCAAATGAGATGTTTGACGATGTTAAGTCGAGCA 836
||||||||||||||||| | || ||||| | |||||||||| | |||||||||||| | |
Sbjct 833 TTTGCAAGAGTAATGAGTTGAACAAAGCGAGTGAGATGTTTAAAGATGTTAAGTCGGGTA 892
Query 837 GTGTTTGCTCACCCGATGTTGTTACGTATACGTCGATGATCTCAGGGTACTGCAAAGCTG 896
|||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 893 GTGTTTGCTCTCCTGATGTTGTTACATATACTTCGATGATCTCAGGGTACTGCAAAGCTG 952
Query 897 GAAAGATGCAAGAAGCATCG-GTTTTGTTAGATGACATGCTTCGTTTGGGAATATACCCA 955
| ||||||| ||||| ||| | |||||||||||| |||||||||||||| ||||| |||
Sbjct 953 GGAAGATGCGTGAAGCGTCGAG-TTTGTTAGATGATATGCTTCGTTTGGGGATATATCCA 1011
Query 956 ACCAATGTGACTTTTAATGTTCTCGTGGATGGTTATGCGAAAGCTGGTGAGATGCATACT 1015
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 1012 ACTAATGTGACTTTTAATGTCCTCGTTGATGGTTATGCGAAAGCTGGTGAGATGCTTACT 1071
Query 1016 GCTGAAGAAATTCGTGGGAAAATGATTTCTTTTGGCTGTTTCCCAGACATTGTGACCTTC 1075
|||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||
Sbjct 1072 GCTGAAGAAATTCGTGGGAAAATGATTTCTTTTGGCTGTTTCCCGGATGTAGTGACGTTT 1131
Query 1076 ACTTCCTTAATTGATGGATACTGTAGAGTAGGACAAGTGAACCAAGGGTTTAGACTTTGG 1135
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||
Sbjct 1132 ACTTCCTTAATTGATGGATATTGTAGAGTAGGACAAGTGAGCCAAGGTTTTAGGCTTTGG 1191
Query 1136 GAAGAAATGAATGCCAGAGGAATGTTTCCTAATGCATTTACCTATTCTATTCTTATCAAT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAAGAAATGAATGCCAGAGGAATGTTTCCTAATGCATTTACCTATTCTATTCTTATCAAT 1251
Query 1196 GCACTCTGTAAAGAGAATAGGCTTCTCAAGGCTCGTGAACTTTTGGGGCAGTTAGCTAGT 1255
|| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1252 GCGCTCTGTAACGAGAATAGGCTGCTCAAGGCTCGTGAACTTCTGGGGCAGTTAGCTAGT 1311
Query 1256 AAGGACATTATTCCACAACCATTTATGTACAACCCTGTAATTGATGGGTTTTGTAAAGCT 1315
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1312 AAGGACATTATTCCACAACCATTTATGTACAACCCTGTCATTGATGGGTTTTGTAAAGCT 1371
Query 1316 GGAAAGGTCAGTGAGGCAAATGTTATCGTGGAAGAGATGGAGAAGAAGAAATGCAAACCA 1375
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1372 GGAAAGGTCAATGAGGCAAATGTTATTGTGGAAGAGATGGAGAAGAAGAAATGCAAACCA 1431
Query 1376 GATAAGATCACATTTACGATTCTTATAATTGGACATTGCATGAAAGGAAGGATGTTTGAA 1435
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1432 GATAAGATCACATTTACGATTCTTATAATCGGGCATTGCATGAAAGGAAGGATGTTTGAA 1491
Query 1436 GCAGTCAGCATTTTCCACAAAATGGTGGCAATAGGTTGTTCACCAGATAAAATTACAGTG 1495
||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 1492 GCAGTTAGCATTTTCCACAAAATGGTTGCGATAGGTTGTTCACCGGATAAGATTACTGTG 1551
Query 1496 AGTTCTTTGTTATCTTGTCTTCTTAAGGCCGGTATGGCTAAGGAGGCCTATCACCTAAAC 1555
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1552 AGTTCTTTGTTATCTTGTCTTCTTAAGGCTGGTATGGCTAAGGAGGCCTATCACTTAAAC 1611
Query 1556 CAGATAGCACATAAAGGCCAAATTAATGATGGGGCACCTCTAGAGACGAAAACAGCAAAT 1615
|||||||||| ||||||||||| |||| | | || |||||||||||||||||| ||||||
Sbjct 1612 CAGATAGCACGTAAAGGCCAAAGTAATAACGTGGTACCTCTAGAGACGAAAACCGCAAAT 1671
Query 1616 GTGACTCTGGCTGCCTGCTAGACTTTCGATATAATATCTCT 1656
| ||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1672 GCGACTCTGGCTGCCTGCTAGGCTTTCTATATAATATATCT 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81826888350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5