BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930908

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa...   580    4e-165


> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) 
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116

 Score =  580 bits (314),  Expect = 4e-165
 Identities = 475/548 (87%), Gaps = 29/548 (5%)
 Strand=Plus/Plus

Query  1     CTCGAATCCCAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA  60
             |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct  1194  CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA  1253

Query  61    AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCATCCAAGGTGGAGTATTA  119
             |||| |||||||||||||||| | ||||||||  |  ||||  |||||||||||||||||
Sbjct  1254  AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA  1312

Query  120   AGTGGTGAAGGTGGAGAAGAAACGGAAAATATTCTGCTACTTGATGTTGCACCTTTGCGC  179
             |||||||||||||||||||||||  |||||||||| || ||||||||||| |||||| | 
Sbjct  1313  AGTGGTGAAGGTGGAGAAGAAACACAAAATATTCTACTGCTTGATGTTGCGCCTTTGAGT  1372

Query  180   CTCGGTATTGACACTGTCGGAGGCGTGATGACACACATTATTCCTCG-AA-----T---C  230
             ||||||||||| ||||||||||||||||||||| ||||||||||  | ||     |   |
Sbjct  1373  CTCGGTATTGAAACTGTCGGAGGCGTGATGACAAACATTATTCCGAGGAACACGGTGATC  1432

Query  231   CCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGACTATC  290
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1433  CCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGACTATC  1492

Query  291   AACGTCTATGAAG---AGATAAGCATGACGAAAGATAACCCCGAGCTCGGAAATTTTC-A  346
             |||||||| ||||   ||| |||||||||||||||||||| |||||| ||||| || | |
Sbjct  1493  AACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATT-CGA  1551

Query  347   CCTCACCGGCCTTCTTCCTATGCAAGGAACAGTTTTTGGG-GTGCCACAAATGGAGGTGA  405
              ||||| ||| ||||||||  |||     |||     ||| |||||||| || |||||||
Sbjct  1552  TCTCACAGGCATTCTTCCT--GCACC---CAG-----GGGAGTGCCACAGATTGAGGTGA  1601

Query  406   CTTTCGAAGTGGACGCAAATGGGATTCTGCAGGTGAACG-TCAAAGACAAAGTTCCAAAG  464
             ||||||||||||||||||||||||| ||||||||||| | | || ||||||||| | |||
Sbjct  1602  CTTTCGAAGTGGACGCAAATGGGATCCTGCAGGTGAAAGCTGAA-GACAAAGTTGCTAAG  1660

Query  465   ACGTCACAGTCAATTACAATAACGAACGATAAAGGTCATTTGATAGGAGAAGAGATTGAT  524
             |||||||| || ||||||||||||||||||||||||| ||||| || |||||||||||| 
Sbjct  1661  ACGTCACAATCGATTACAATAACGAACGATAAAGGTCGTTTGACAGAAGAAGAGATTGAG  1720

Query  525   GAAATGAT  532
             ||||||||
Sbjct  1721  GAAATGAT  1728



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27578546703


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5