BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930908 Length=574 Score E Sequences producing significant alignments: (Bits) Value AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa... 580 4e-165 > AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) family protein | chr1:2929217-2931841 REVERSE LENGTH=2116 Length=2116 Score = 580 bits (314), Expect = 4e-165 Identities = 475/548 (87%), Gaps = 29/548 (5%) Strand=Plus/Plus Query 1 CTCGAATCCCAAAAGTTCAGTAGATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACA 60 |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || Sbjct 1194 CTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCA 1253 Query 61 AAGGAACTAACCCTGATGAGGTTTTGGCCTAT-ACAACCGCCATCCAAGGTGGAGTATTA 119 |||| |||||||||||||||| | |||||||| | |||| ||||||||||||||||| Sbjct 1254 AAGGGACTAACCCTGATGAGGCTGTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTA 1312 Query 120 AGTGGTGAAGGTGGAGAAGAAACGGAAAATATTCTGCTACTTGATGTTGCACCTTTGCGC 179 ||||||||||||||||||||||| |||||||||| || ||||||||||| |||||| | Sbjct 1313 AGTGGTGAAGGTGGAGAAGAAACACAAAATATTCTACTGCTTGATGTTGCGCCTTTGAGT 1372 Query 180 CTCGGTATTGACACTGTCGGAGGCGTGATGACACACATTATTCCTCG-AA-----T---C 230 ||||||||||| ||||||||||||||||||||| |||||||||| | || | | Sbjct 1373 CTCGGTATTGAAACTGTCGGAGGCGTGATGACAAACATTATTCCGAGGAACACGGTGATC 1432 Query 231 CCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGACTATC 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 CCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGACTATC 1492 Query 291 AACGTCTATGAAG---AGATAAGCATGACGAAAGATAACCCCGAGCTCGGAAATTTTC-A 346 |||||||| |||| ||| |||||||||||||||||||| |||||| ||||| || | | Sbjct 1493 AACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATT-CGA 1551 Query 347 CCTCACCGGCCTTCTTCCTATGCAAGGAACAGTTTTTGGG-GTGCCACAAATGGAGGTGA 405 ||||| ||| |||||||| ||| ||| ||| |||||||| || ||||||| Sbjct 1552 TCTCACAGGCATTCTTCCT--GCACC---CAG-----GGGAGTGCCACAGATTGAGGTGA 1601 Query 406 CTTTCGAAGTGGACGCAAATGGGATTCTGCAGGTGAACG-TCAAAGACAAAGTTCCAAAG 464 ||||||||||||||||||||||||| ||||||||||| | | || ||||||||| | ||| Sbjct 1602 CTTTCGAAGTGGACGCAAATGGGATCCTGCAGGTGAAAGCTGAA-GACAAAGTTGCTAAG 1660 Query 465 ACGTCACAGTCAATTACAATAACGAACGATAAAGGTCATTTGATAGGAGAAGAGATTGAT 524 |||||||| || ||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 1661 ACGTCACAATCGATTACAATAACGAACGATAAAGGTCGTTTGACAGAAGAAGAGATTGAG 1720 Query 525 GAAATGAT 532 |||||||| Sbjct 1721 GAAATGAT 1728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27578546703 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5