BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930917
Length=308
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40190.1 | Symbols: LEW3 | UDP-Glycosyltransferase superfami... 298 2e-80
> AT2G40190.1 | Symbols: LEW3 | UDP-Glycosyltransferase superfamily
protein | chr2:16785194-16787530 FORWARD LENGTH=1703
Length=1703
Score = 298 bits (161), Expect = 2e-80
Identities = 199/218 (91%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 1 GTTTATCACTTTCCGTGATCAATGCAAGAAACAATAAAAAACGTGCGGTGGGATTCTTCC 60
|||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 97 GTTTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCC 156
Query 61 ATCCGTACACGAACGACGGTGGCAGTGGCGAGAGAGTGCTCTGATGCGCAGTCAAAGCCA 120
||||||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||
Sbjct 157 ATCCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCA 216
Query 121 GCCAAGAGGAAACTCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TTCAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 276
Query 181 CTGATAGCTTACCTCGTCGCGTCGTTGATAGATGCGGT 218
||||||||||| ||||||||| ||||||| ||| ||||
Sbjct 277 CTGATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGT 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14276040716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5