BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930918
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06020.1 | Symbols: | Homeodomain-like superfamily protein ... 387 2e-106
> AT2G06020.1 | Symbols: | Homeodomain-like superfamily protein
| chr2:2342535-2346207 FORWARD LENGTH=906
Length=906
Score = 387 bits (209), Expect = 2e-106
Identities = 359/427 (84%), Gaps = 28/427 (7%)
Strand=Plus/Plus
Query 816 TCAACAACAACTTCAGGTAAACAATAG-TTGTGTCATTCATGACTCATATCACAATGCAA 874
|||||||||||||||| | |||||| | |||||||| ||||||||||||| ||||||||
Sbjct 489 TCAACAACAACTTCAGCTCAACAAT-GATTGTGTCAATCATGACTCATATTGCAATGCAA 547
Query 875 CTTTTTCATCGGCT-ACGGTACCACCAACAATTAATTCTCTTCATCAGGACACTTTAAAC 933
|||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 548 CTTTTTTATCGG-TCACGGTACCACCAACAATTGATTCTCTTCATCAGGACACTTTAAAC 606
Query 934 AATACAATTGTTTTGT-CAACAACACCACAATCAATA-CAAGCATCTGT-TC-CAC---A 986
||||||||| |||| | |||| |||| |||| ||||| | | ||||||| || ||| |
Sbjct 607 AATACAATTCTTTT-TCCAACGACACTACAAGCAATACCGA-CATCTGTGTCACACAATA 664
Query 987 C--A-ATCAG----TATCCTCCATACAATACTCTTGAAGTGGTGAAAGCACAGCTCAATG 1039
| | || || |||||| ||||||||||| ||||||| || ||||| ||||||||||
Sbjct 665 CGTACATGAGTTCATATCCTTCATACAATACTGTTGAAGTTGTTAAAGCTCAGCTCAATG 724
Query 1040 CATTACAAGATTCAAGCACTAACCAAACTCAAGAAACACTTTCTCGTGGAACCACCTTAT 1099
||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||
Sbjct 725 CATTACAAGATTCAAGCACTAGCCAAACACAAGAAACATTTTCTCGTGAAACCAACTTAT 784
Query 1100 CGTCT-TCTGTCACAAGAGATGAGGTTGACCCAGTGGATACGTATATTGATTGGGATAAA 1158
||||| | |||||||| ||||| | || |||||||||| ||||||||||||| | |||
Sbjct 785 CGTCTATA-GTCACAAGGGATGAAGCAGATCCAGTGGATAAGTATATTGATTGGAACAAA 843
Query 1159 GTTA-ACGAAAGGGATATTGAACTTGAT-CTAGTTGAAATTCTTTGAGGCTTTAGGTTTT 1216
||| | |||| |||||||||| |||| | ||| ||| | ||| ||||||||||||||
Sbjct 844 GTTGGA-GAAACTGATATTGAACATGATTC-AGTCGAAGTCCTT-GAGGCTTTAGGTTT- 899
Query 1217 GGAGTAA 1223
| |||||
Sbjct 900 GAAGTAA 906
Score = 316 bits (171), Expect = 2e-85
Identities = 185/192 (96%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 114 AAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGCGGTGGTCAAG 173
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 219 AAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGAGGTGGTCAAG 278
Query 174 AGACCTTCACGATTGCTTTGTTACTGCTGTGGAAAAACTTGGTGGACCTGACAAAGCAAC 233
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 279 CGACCTTCACGATTGCTTTGTTAATGCTGTGGAAAAACTTGGTGGACCTAACAAAGCGAC 338
Query 234 GCCAAAAAGTGTTAAAGAGACAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAAGAG 293
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GCCAAAAAGTGTTAAAGAGGCAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAAGAG 398
Query 294 CCATCTTCAGAA 305
|||||||||||
Sbjct 399 TCATCTTCAGAA 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5