BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930924

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:...   411    2e-114
  AT2G18917.1 | Symbols:  | other RNA | chr2:8197114-8198103 FORW...   231    2e-60 


> AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:8194572-8197483 
REVERSE LENGTH=2284
Length=2284

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 244/255 (96%), Gaps = 0/255 (0%)
 Strand=Plus/Plus

Query  1    GTGGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  GTGGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA  278

Query  61   TGAGGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGG  120
            ||| ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct  279  TGAAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGG  338

Query  121  TAGTCTTCCTGGAACAGCGTCGTGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAA  180
            |||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct  339  TAGTCTTCCTGGCACGGCGCCGTGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAA  398

Query  181  CCCTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGT  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  399  CCCTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGT  458

Query  241  TATTGGTCGAAATTG  255
            |||||||||||||||
Sbjct  459  TATTGGTCGAAATTG  473


> AT2G18917.1 | Symbols:  | other RNA | chr2:8197114-8198103 FORWARD 
LENGTH=831
Length=831

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 143/152 (94%), Gaps = 0/152 (0%)
 Strand=Plus/Minus

Query  1    GTGGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  GTGGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGA  93

Query  61   TGAGGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGG  120
            ||| ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct  92   TGAAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGG  33

Query  121  TAGTCTTCCTGGAACAGCGTCGTGTGGTTTTG  152
            |||||||||||| || ||| ||||||| ||||
Sbjct  32   TAGTCTTCCTGGCACGGCGCCGTGTGGGTTTG  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12918811493


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5