BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930926

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06090.1 | Symbols:  | Plant self-incompatibility protein S1...   455    2e-127


> AT2G06090.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr2:2371607-2372014 REVERSE LENGTH=408
Length=408

 Score =  455 bits (246),  Expect = 2e-127
 Identities = 360/414 (87%), Gaps = 12/414 (3%)
 Strand=Plus/Plus

Query  22   ATGAATAATCTTTTCGTTTTGGTCGTTGTAATTGCTTTGAGTGTGGGATTGAACAACGGT  81
            |||||||||||||| |||||| || || | ||||||||||||||||||| |||||| |||
Sbjct  1    ATGAATAATCTTTTTGTTTTGCTCATTATTATTGCTTTGAGTGTGGGATCGAACAATGGT  60

Query  82   AGC-AGACTCTTTCCAAAAAACCAATTATATTTTAGAAACTCTTTTAGCA-GAAATACTG  139
            ||| || ||||  ||||||||||||||| | ||||||||||||||||||| ||| || ||
Sbjct  61   AGCAAG-CTCTGGCCAAAAAACCAATTACACTTTAGAAACTCTTTTAGCAGGAATTA-TG  118

Query  140  AAGTTCTTACGGTTCATTGCAAATCTGAAA-AAGACGATCTCGGTATTCACACAGT-GCA  197
            | |||||||||||||||||||||||| ||| | || |||||||||||||||||||| || 
Sbjct  119  ATGTTCTTACGGTTCATTGCAAATCT-AAAGATGATGATCTCGGTATTCACACAGTGGC-  176

Query  198  ACGTTCTTACGTATATACTTTTAAGTTTGGGGATAGCTTTTTCGGTTCGACTGAGTTTGT  257
             ||||| |||| ||||| ||||||||||| ||||||| ||||||||  |||||||||| |
Sbjct  177  TCGTTCATACGAATATAATTTTAAGTTTGAGGATAGCGTTTTCGGTAGGACTGAGTTTTT  236

Query  258  CTGTACACTAAAGCATGGGGTTCGTTCTAAATATTCTGTAACATTTACTGCATATAAAGA  317
            ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  237  CTGTACACTAATGCATGGGGTTGGTTCTAAATATTCTGTAACATTTACTGCATATAAAGC  296

Query  318  GAATCCTTCTTTT-TATATAAGAACCGGTGTCGTTAGAGTTTGGGAGGCTTTAGATGATG  376
            ||| ||| ||||| | |  ||| ||||||||| | | | ||||||| |||||||||||||
Sbjct  297  GAAACCTGCTTTTGT-TGCAAGTACCGGTGTCATAAAAATTTGGGATGCTTTAGATGATG  355

Query  377  GGATCTACCTCACAGATGAAGATCATC-ATTTTGAGAAAATGTATGATTGGTAA  429
            | ||||||||||||||||||||||| | |||| | |||||| |||| |||||||
Sbjct  356  GAATCTACCTCACAGATGAAGATCA-CGATTTCGTGAAAATATATGGTTGGTAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5