BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930931

Length=281
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00740.1 | Symbols: RPOA | RNA polymerase subunit alpha | ch...   425    8e-119


> ATCG00740.1 | Symbols: RPOA | RNA polymerase subunit alpha | 
chrC:77901-78890 REVERSE LENGTH=990
Length=990

 Score =  425 bits (230),  Expect = 8e-119
 Identities = 251/260 (97%), Gaps = 5/260 (2%)
 Strand=Plus/Plus

Query  27   ATTCTTTTTCTAGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAA  86
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  592  ATTCTTTTTCTAGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCACTTCATCAA  651

Query  87   GCCTCCCGGAATTTGATTAATTTATTTATTCCTTTTCTACATGTAGAAGAAGAAACGTTC  146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  652  GCCTCCCGGAATTTGATTAATTTATTTATTCCTTTTCTACATGTAGAAGAAGAAACGTTC  711

Query  147  TATTTAGAGAACAATCAGCATCAAGTTACTTTACCtttttttCCTTTTCATAATAGATTA  206
            ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct  712  TATTTAGAGAACAATCAACATCAAGTTACTTTACCCTTTTTTCCTTTTCATAATCGATTA  771

Query  207  GTTAACCTAAGaaaaaaaaa-----CAAAAGAACTAGCCTTTCAATATATTTTTATTGAC  261
            ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||
Sbjct  772  GTTAACCTAAGAAAAAAAAAAAAAACAAAAGAACTAGCCTTTCAATATATTTTTATTGAC  831

Query  262  CAATTAGAATTGCCTCCCAG  281
            ||||||||||||||||||||
Sbjct  832  CAATTAGAATTGCCTCCCAG  851



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12918811493


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5